Query= MSMg01no408_d22.b1 MSMg01no408_d22.b1 CHROMAT_FILE:
MSMg01no408_d22.b1 PHD_FILE: MSMg01no408_d22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:10 2005
(478 letters)
>mm_chr5_42981734_42982610
Length = 877
Score = 750 bits (388), Expect = 0.0
Identities = 455/478 (95%), Gaps = 9/478 (1%)
Strand = Plus / Plus
Query: 5 gaattcttcaccctgta-ccaacttctgaattgattctagatgaaagaggaagcaaacat 63
||||||||||||||| | ||||||||||||||||||| ||||||||||||||| |||||
Sbjct: 205 gaattcttcaccctg-aggcaacttctgaattgattctggatgaaagaggaagccaacat 263
Query: 64 gtgtaaactaacagaatagcataccagccaaacggaagaagaaaaaatgggggcagagga 123
|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 264 gtgtaaactaacagaatagcataccagctaaatggaagaagaaaaaatgggggcagaggc 323
Query: 124 atgagttagctcctgtctcacactgtggtaacacaggctgtgagggaataatagccggaa 183
||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||| |||
Sbjct: 324 atgagttagctcctgtctcgcactgtggtaacataggctgtgagggaatagtagccagaa 383
Query: 184 gttagtattggttaatattcaatggaaggtaacttcattattctcagagagttccttaag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gttagtattggttaatattcaatggaaggtaacttcattattctcagagagttccttaag 443
Query: 244 aaagaagggacagtttctaattgagtctaaaagaaatgtgagattcacaacaaattatct 303
|||||||| | ||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct: 444 aaagaagg-a-agtttctaattgagtctaaaagaaatgtgggattcacaacaaattagct 501
Query: 304 agccataatcagcatcttctctatattgac-cccaatgccacagcaaagtgtttatggtg 362
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 502 agccataatcagcatcttctctatattgactcccaatgccacagcaaagtgcttatggtg 561
Query: 363 taaaatctgtc--tcttccatccagagtcagctaatatttgataagcttctattgtagac 420
||||| || || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 taaaa-ct-tccatcttccatccagagtcagctaatatttgataagcttctattgtagac 619
Query: 421 ccctcaatctcataaatggtttaggtatttgggtattatggccagatagaaagagtac 478
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 620 ccctcaatctcataaatggtttaggtatttgggtattatggtcagatagaaagagtac 677
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 877
Length adjustment: 10
Effective length of query: 468
Effective length of database: 867
Effective search space: 405756
Effective search space used: 405756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no408_d22.g1 MSMg01no408_d22.g1 CHROMAT_FILE:
MSMg01no408_d22.g1 PHD_FILE: MSMg01no408_d22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:10 2005
(418 letters)
>mm_chr5_43153324_43154141
Length = 818
Score = 632 bits (327), Expect = 0.0
Identities = 380/406 (93%), Gaps = 15/406 (3%)
Strand = Plus / Minus
Query: 13 ttctcgcagcaaggggcagttcaacaaatgagaaggagctatattgggagaaaatttggg 72
|||| |||||||||||||||| |||||||||||||| | |||||| ||||||| ||||||
Sbjct: 818 ttcttgcagcaaggggcagttaaacaaatgagaaggggttatatt-ggagaaagtttggg 760
Query: 73 ttcaaagtcttcctctgtcttgacagccatgtgaccttggacaagttactcaattattcc 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 ttcaaagtcttcctctgtcttgacagccatgtgaccttggacaagttactcaattattcc 700
Query: 133 actctactgtttcctaatggtagaatgaggacaattgcagtcatgtaaaacaaaacaaaa 192
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 699 actctactgtttcttaatggtagaatgaggacaattgcagtcatgtaaa-------aaaa 647
Query: 193 caaaacaaaaacaaaaacaaaaacaaaaacaaaaaactgtcagatgtgacctatatccat 252
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 646 caaaac-------aaaacaaaaacaaaaacaaaaaactgtcagatgtgacctatatccgt 594
Query: 253 gagtagcagaagccaaatactttgtgcctttattcttctttggtcaaagtcctgatgtag 312
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 tagtagcagaagccaaatactttgtgcctttattcttctttggtcaaagtcctgatgtag 534
Query: 313 ggccttgttttgggaaatttccaatatgaatatgtgataaacagataggtaggtagtgat 372
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 533 ggccttgttttgggaaatttccaatatgaatatgtaataaacagataggtaggtagtgat 474
Query: 373 ggagagacagataanaaccaaacaaacttaaaattcgacaaaagaa 418
||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 473 ggagagacacataaaaaccaaacaaacttaaaattcgacaaaagaa 428
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 818
Length adjustment: 9
Effective length of query: 409
Effective length of database: 809
Effective search space: 330881
Effective search space used: 330881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
