BAC Information

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BAC

Clone NameMSMg01-408H17
Chromosome5 (Build37)
Map Location 52,178,267 - 52,337,344
singlet/doubletdoublet
Overlap genenone
Upstream geneEG624734, LOC666265, LOC100041059, Ppargc1a
Downstream geneDhx15, Sod3, Gm447, LOC100041805, Lgi2, LOC545750, D5Ertd135e, Pi4k2b, Zcchc4, Anapc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-408H17.T7 (MSMg01no408_h17.b1)MSMg01-408H17.TJ (MSMg01no408_h17.g1)
ACCAG506190AG506191
length771774
length of high quality
(start - end)		520 (37 - 556)533 (68 - 600)
definitionCHROMAT_FILE: MSMg01no408_h17.b1 PHD_FILE: MSMg01no408_h17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:28 2005CHROMAT_FILE: MSMg01no408_h17.g1 PHD_FILE: MSMg01no408_h17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,178,267 - 52,178,782)(52,336,812 - 52,337,344)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGA
AAACCTCCCAGGGATTTGCAATTTCTTGGAGCAAATATTTCATACTCCCT
CCGCGAATAGAAGGAATCGGGATGAACACGAGCCCAGAAAGATCCTGCAA
TCTTGGGAAGATGCTAGACATCATGGAAGACCCAAAGTTAGAGTACCTGA
AGCTCAAGGTAAAACTGAAAAGAGCTATGAATGTGTTTTATGACCAGCGC
AAGCTGCCTGCCAAATAACAATCCTCTGCTATATAGTGTCCGACACAATA
GAATTTAACACATCTTAAATTAATCATGATGGGGACCACATAATTAACTT
CTACTTATTATTATCATTCTGGGCCTGTGAGTAGCTTGCCAGGTTCTTTC
TCCATGAGACCACTAACAAAATGCCCATAAATTTAAGGTTGCTAAAGGAA
CATGAGCTAAGAAATATAATTCTTTGAATGTTTTGACTCTTTGGATCTGA
AATAAAGGTGTGTGATGGCTTATATATGTTTGTCCCAGGGAGTGGCACTG
TTAGGAGGTGTGGCCTTGTTGGAGAAAGTGTCTCTGTGAGGGTGGACTTT
GAGACCATCTTCCTAGCCATGTANGAGTCAGTCTGCTCCTGGCTTCTTTA
AATGAAGATGTAGAAATCTCATCTCTTCCCAGAAAAATCCTTGCCTGGGT
CCTGTCTCTATAAAATAAAATGGAATGGTTGAACTGGAGACCAACCCCAA
TTAAAGGTTGCCCTTTAAAAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACTTCAGTTGTGCTACATCATGCCTTAACTCAA
GGAGAAAGATGTTACAGTTGGCACATTATCAATGAGGAAAATTGAGAGAC
TAAAGAAGATGACATGGGAGAGAGCAGAAGGCCGTGACTTGAATTTTGTA
GGACATTCACCAGTGAAGCTGCAAGGAAGTGGAGGGACAGGATAGGTCAG
TATCTGGGAAAGAGACAGAAACTGGAAAGTCATGGTCACTGTTCAGGTGC
CCTAGGAAGTTAAACAGAATTAAGAGTTGAGGAAATAGCCCAGGACTTGG
TGCAGATGACACTCTTGATGTCCCTATGGCCAGACTGTCTAGTGAACACA
AGTATGTGCTGGGGTCTCAGAGTCCTCCCCACATGGAGGAATGTCTAGTG
AGAAAACAGACAGAATGCTTATTGCACATATGAGAGAAAGAAGGAAATCA
AAGCACCAGCTTATAAACACAACACCTGAGGTTGTTTGTTTAGAGTGGAA
AGAGTGTCTATGAAGGCAGATGCAGAGGGGAGAATGGGAGGCTGACACAG
AAGAGAAATGCAACAACTCACGTGGCTGGTGACAGATGGGCAATCTTGGG
TGGGAGGGCAGAAAGGAAAATGTCCCGAGAGGAGATGTAATAACAGGCTT
CCAATAATGAGAGGAATGTTTATGGGGCTAAGGGTTGGTGCCCCCCACCT
TCCAAGGCTTTGCTTTTGTGGTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no408_h17.b1 MSMg01no408_h17.b1 CHROMAT_FILE:
MSMg01no408_h17.b1 PHD_FILE: MSMg01no408_h17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:28 2005
         (520 letters)



>mm_chr5_52178063_52178982
          Length = 920

 Score =  951 bits (492), Expect = 0.0
 Identities = 510/516 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagaaaacctcccagggatttgcaatttcttggagcaaatatttcatactccct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagaaaacctcccagggatttgcaatttcttggagcaaatatttcatactccct 264

                                                                       
Query: 65  ccgcgaatagaaggaatcgggatgaacacgagcccagaaagatcctgcaatcttgggaag 124
           ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct: 265 ccgcgaatagaaggaatcgggatgaacaccagcccagaaagatcctacaatcttgggaag 324

                                                                       
Query: 125 atgctagacatcatggaagacccaaagttagagtacctgaagctcaaggtaaaactgaaa 184
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 325 atgctagacatcatggaagacccaaagttagagtacctgaagttcaaggtaaaactgaaa 384

                                                                       
Query: 185 agagctatgaatgtgttttatgaccagcgcaagctgcctgccaaataacaatcctctgct 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 385 agagctatgaatgtgttttatgaccagcgcaagctgcctgccaaataacaatcctctgtt 444

                                                                       
Query: 245 atatagtgtccgacacaatagaatttaacacatcttaaattaatcatgatggggaccaca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atatagtgtccgacacaatagaatttaacacatcttaaattaatcatgatggggaccaca 504

                                                                       
Query: 305 taattaacttctacttattattatcattctgggcctgtgagtagcttgccaggttctttc 364
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 505 taattaacttctacttattattatcattctgggcctgtgattagcttgccaggttctttc 564

                                                                       
Query: 365 tccatgagaccactaacaaaatgcccataaatttaaggttgctaaaggaacatgagctaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tccatgagaccactaacaaaatgcccataaatttaaggttgctaaaggaacatgagctaa 624

                                                                       
Query: 425 gaaatataattctttgaatgttttgactctttggatctgaaataaaggtgtgtgatggct 484
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 625 gaaatataattctttgaatgttttgactctttggatctgaaataaaggtgtgtgatggtt 684

                                               
Query: 485 tatatatgtttgtcccagggagtggcactgttagga 520
           ||||||||||||||||||||||||||||||||||||
Sbjct: 685 tatatatgtttgtcccagggagtggcactgttagga 720


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space:   464100
Effective search space used:   464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no408_h17.g1 MSMg01no408_h17.g1 CHROMAT_FILE:
MSMg01no408_h17.g1 PHD_FILE: MSMg01no408_h17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:28 2005
         (533 letters)



>mm_chr5_52336612_52337544
          Length = 933

 Score =  984 bits (509), Expect = 0.0
 Identities = 527/533 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttcagttgtgctacatcatgccttaactcaaggagaaagatgttacagttggcacatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 acttcagttgtgctacatcatgccttaactcaaggagaaagatgttacagttggcacatt 674

                                                                       
Query: 61  atcaatgaggaaaattgagagactaaagaagatgacatgggagagagcagaaggccgtga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 atcaatgaggaaaattgagagactaaagaagatgacatgggagagagcagaaggccgtga 614

                                                                       
Query: 121 cttgaattttgtaggacattcaccagtgaagctgcaaggaagtggagggacaggataggt 180
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 613 cttgaattttgtaggacattcaccagtaaagctgcaaggaagtggagggacaggatatgt 554

                                                                       
Query: 181 cagtatctgggaaagagacagaaactggaaagtcatggtcactgttcaggtgccctagga 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 cagtatctgggagagagacagaaactggaaagtcatggtcactgttcaggtgccctagga 494

                                                                       
Query: 241 agttaaacagaattaagagttgaggaaatagcccaggacttggtgcagatgacactcttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 agttaaacagaattaagagttgaggaaatagcccaggacttggtgcagatgacactcttg 434

                                                                       
Query: 301 atgtccctatggccagactgtctagtgaacacaagtatgtgctggggtctcagagtcctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 atgtccctatggccagactgtctagtgaacacaagtatgtgctggggtctcagagtcctc 374

                                                                       
Query: 361 cccacatggaggaatgtctagtgagaaaacagacagaatgcttattgcacatatgagaga 420
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 373 cccacatggaggaatgtctagtgagaaaacagacagaatgctcattgcacatatgagaga 314

                                                                       
Query: 421 aagaaggaaatcaaagcaccagcttataaacacaacacctgaggttgtttgtttagagtg 480
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 313 aagaaggaaatcaaagcaccggcttataaacacaacacctgaggttgtttgtttagagtg 254

                                                                
Query: 481 gaaagagtgtctatgaaggcagatgcagaggggagaatgggaggctgacacag 533
           |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 253 gaaagagtgtctatgaaggcaggtgcagaggggagaatgggaggctgacacag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space:   482729
Effective search space used:   482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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