BAC Information

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BAC

Clone NameMSMg01-408I10
Chromosome5 (Build37)
Map Location 62,259,176 - 62,259,508
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666597, EG666610, LOC100041524, G6pd2
Downstream geneLOC100041543, Centd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-408I10.T7 (MSMg01no408_i10.b1)MSMg01-408I10.TJ (MSMg01no408_i10.g1)
ACCAG506224AG506225
length753744
length of high quality
(start - end)		493 (46 - 538)487 (74 - 560)
definitionCHROMAT_FILE: MSMg01no408_i10.b1 PHD_FILE: MSMg01no408_i10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:32 2005CHROMAT_FILE: MSMg01no408_i10.g1 PHD_FILE: MSMg01no408_i10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTAGACTTTCCATGGATCTGGAGGGTATCATCCTGAGTGAGGTAA
CCCAATCACAAAAGAACACACATGATATACACTCACTGATAAACGGATAT
TAGCCCAGAAACTTAGAATATCTAAGATACAATTNTGAAAAAAAAACAAA
AACAAAAACAAAAAAACAAAAAACATGAAACTTAAGAAGAAGGAAGATCA
AAGTGTGGATAGTTCGTTCCTTCTTAGAATGGGGAAGAAAATACCCATGA
AAGAAGTTACAGAGACAAAGTTTGTAGCTTAGATGGAAGGAAGGACAATC
TACAGACTGCCCTACCAGGAGATTCATTCCATAAACAACCACAAAACACA
GACACTATTGCATATGCCAGCAAGATTATGCTCACAGGACCCTGATGTAG
CTATCCCTTGTGAGACTATGCCGAGGCCTAGCAAACACAGAAGTGGATAA
TCACAGTCATCTATTGAATGGAACACAGGGCCCCAAATGAAGGAGCTAGA
GAAAGTAACCAAGGAGCTGAAGGGGTCTGCCNCCCTATATGAGGAACAAC
AATATGAACTTAGTAGTACCCCTCTCCCTGAGAGCTCATGTCTCTAGTTT
CAAATGGTACATAGGCTGGCCTAATTGGCCATTTATGGGAGGGAAAGGCC
CTTGGTCCTCGCTAAAAATTAATCCCCCACACAGGGGAAATGGCTGGGCC
AGA

ATGATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTGGAGAGCTACTAGTCTTCAGTTCCC
CCAAAAGAACTGAAGATATTAAGGTCTGGTGACATTTTTATACCTTCACC
AGAAACAGAATATAAGGGCATTCATATCAGACAAGGTTGCGCAGTAAAGG
AAAATAGATCCACAGGCAGGCAGAAAACATATTTAGGGACAGTCCCTGCT
ACAATTGGGGAACCAGCATGAAGACCAAGATGTACATCTGTTATATACAT
GCAGGGGACCTATGTCCAGCCTGTGGTCATTCTTTGGTGGTTGGTCAGTC
TCTGGGAGCATCCACAGGTCCAGTTTACTTGACTCTGCTGGTCTTCCTGT
GGAGTCCTCTTCCTGTTCATGACCCCCCTTTTTAACAGATCCCTAAGTCC
CTTGTATTGTCCTGACAGTGTTTCTGTGTACTGAACTGTGGTAGCTTGCA
CACTGAAGCATAAGTAAGAGAGTCTAGAATCATTCTGTCTGTGTAGAATA
TGTGAGCCAGCAGCTCTTCAGCTGTAAGTTCTCTACAACTTGTAACTAAC
TGTTTCCTGGACACATTTATGATTTGTGCCCTTGACAGTTGCACTACACG
TGACTTTTATTTTTCTGAACCCATGAAAATGCTGTCCTCACCTTTAGTTA
CAACCCAACCTATACCGCTGTGTGCTTGGATCTCTCGCTATACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no408_i10.g1 MSMg01no408_i10.g1 CHROMAT_FILE:
MSMg01no408_i10.g1 PHD_FILE: MSMg01no408_i10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:32 2005
         (487 letters)



>mm_chr5_62258622_62259508
          Length = 887

 Score =  629 bits (325), Expect = 0.0
 Identities = 331/333 (99%)
 Strand = Plus / Minus

                                                                       
Query: 155 catatttagggacagtccctgctacaattggggaaccagcatgaagaccaagatgtacat 214
           ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 887 catatttagagacagtccctgctacaattggggaaccagcatgaagatcaagatgtacat 828

                                                                       
Query: 215 ctgttatatacatgcaggggacctatgtccagcctgtggtcattctttggtggttggtca 274
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 ctgttatatacatgcaggggacctatgtccagcctgtggtcattctttggtggttggtca 768

                                                                       
Query: 275 gtctctgggagcatccacaggtccagtttacttgactctgctggtcttcctgtggagtcc 334
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 gtctctgggagcatccacaggtccagtttacttgactctgctggtcttcctgtggagtcc 708

                                                                       
Query: 335 tcttcctgttcatgacccccctttttaacagatccctaagtcccttgtattgtcctgaca 394
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 tcttcctgttcatgacccccctttttaacagatccctaagtcccttgtattgtcctgaca 648

                                                                       
Query: 395 gtgtttctgtgtactgaactgtggtagcttgcacactgaagcataagtaagagagtctag 454
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 gtgtttctgtgtactgaactgtggtagcttgcacactgaagcataagtaagagagtctag 588

                                            
Query: 455 aatcattctgtctgtgtagaatatgtgagccag 487
           |||||||||||||||||||||||||||||||||
Sbjct: 587 aatcattctgtctgtgtagaatatgtgagccag 555


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space:   418329
Effective search space used:   418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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