Query= MSMg01no408_l07.b1 MSMg01no408_l07.b1 CHROMAT_FILE:
MSMg01no408_l07.b1 PHD_FILE: MSMg01no408_l07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:46 2005
(489 letters)
>mm_chr5_41351757_41352645
Length = 889
Score = 861 bits (445), Expect = 0.0
Identities = 478/495 (96%), Gaps = 11/495 (2%)
Strand = Plus / Minus
Query: 5 gaattctggtctctgcttatgtttatttcccaactgctgtgaagcgagtcacttgcttca 64
|||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 526 gaattctggtctctgcatctgtttatttcccaactgctgtgaagtgagtcacttgcttca 467
Query: 65 ccatctacactctaatgtaatgttctgccccattacaaaccaaaggtgacggggccaaga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 ccatctacactctaatgtaatgttctgccccattacaaaccaaaggtgacggggccaaga 407
Query: 125 gttgatgaactgaaacttagacactataaaccttccttcattgtatgttggcgacctcag 184
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 406 gttgatgaactgaaacttagacactataaaccttccttcattgtatgctggcgacctcag 347
Query: 185 agttcagtgaatcctttagataaaaggtctgggagtagaatccagttccatagaagtaaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 agttcagtgaatcctttagataaaaggtctgggagtagaatccagttccatagaagtaaa 287
Query: 245 ctgaaccttgagagcttctgggaagttgttcattaatgacgaggatgatcaacagctaca 304
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 286 ctgaaccttgagagcttctggaaagttgttcattaatgacgaggatgatcaacagctaca 227
Query: 305 gaactagaagccaagcca----------gactagaaaatactctttgttagaacatttct 354
|||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 226 gaactagaagccaagccagacttcctaggactagaaaatactctttgttagaacatttct 167
Query: 355 gtttgttcttccatcttccttaattattatatgttttctcttggttgcagatggggcagc 414
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct: 166 gtttgttcttccatcttcctt-attattatatgttttctcttggttgcagatgtggcagc 108
Query: 415 tttctatcttcaaagcaacatgaatggagttgcaggcagtgacaaaattggcaggttcag 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 tttctatcttcaaagcaacatgaatggagttgcaggcagtgacaaaattggcaggttcag 48
Query: 475 atgtgttcattactg 489
|||||||||||||||
Sbjct: 47 atgtgttcattactg 33
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space: 421041
Effective search space used: 421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no408_l07.g1 MSMg01no408_l07.g1 CHROMAT_FILE:
MSMg01no408_l07.g1 PHD_FILE: MSMg01no408_l07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:46 2005
(279 letters)
>mm_chr5_41162631_41163309
Length = 679
Score = 472 bits (244), Expect = e-137
Identities = 270/279 (96%)
Strand = Plus / Plus
Query: 1 ctatgtatatgcatatgtaatatgtattatatatttgcatataacaacaattaatgaaaa 60
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 ctatgtacatgcatatgtaatatgtattatatatttgcatatagcaacaattaatgaaaa 260
Query: 61 atagagaacacaatttgaaagagaactaagaaggatatataagagggtttggagggagga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atagagaacacaatttgaaagagaactaagaaggatatataagagggtttggagggagga 320
Query: 121 aagggaaggggaatatgacncaaatatagtataatatctaaaacaagagaaatattttta 180
|||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 aagggaagtggaatatgacataaatatagtataatacctaaaacaagagaaatattttta 380
Query: 181 aaggaagactgacattgtgagatggaattatttcaagacctgttagtaccacttcgctgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaggaagactgacattgtgagatggaattatttcaagacctgttagtaccacttcgctgt 440
Query: 241 ttacaagtgtcccttagtttgatggcgaactcagctgtg 279
| |||||||| |||||||||||||||||||||| |||||
Sbjct: 441 taacaagtgttccttagtttgatggcgaactcacctgtg 479
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space: 180900
Effective search space used: 180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
