BAC Information

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BAC

Clone NameMSMg01-408P20
Chromosome5 (Build37)
Map Location 103,462,274 - 103,633,617
singlet/doubletdoublet
Overlap geneMapk10, LOC666563
Upstream geneWdfy3, EG666515, EG666527, LOC625780, Arhgap24
Downstream gene4930429D17Rik, LOC100041039, 1700021F02Rik, LOC100041049, Ptpn13, Slc10a6, 1700016H13Rik, Aff1, Klhl8, Hsd17b13, EG666629, Hsd17b11, Nudt9, Sparcl1, LOC100041136, Dspp, Dmp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-408P20.T7 (MSMg01no408_p20.b1)MSMg01-408P20.TJ (MSMg01no408_p20.g1)
ACCAG506580AG506581
length780791
length of high quality
(start - end)		465 (38 - 502)211 (67 - 277)
definitionCHROMAT_FILE: MSMg01no408_p20.b1 PHD_FILE: MSMg01no408_p20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:10 2005CHROMAT_FILE: MSMg01no408_p20.g1 PHD_FILE: MSMg01no408_p20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,462,274 - 103,462,734)(103,633,408 - 103,633,617)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTG
TTGGATATGCACACATGTGCATACACAACTTTATGATGGCACAGTCAAAA
ATGTATGACATCTCTTTTCAAACTGGTTCCTCTGTGTTTTGTTCCCGTTC
CAAAGTAAAGTTAGTGTAAATAAATGAACAGTCTTTAAGTTTACCTCTTT
CCCAGACACCACAGTCATATCCAGACCCCAGTTCTAACTAGTCTCTATAC
TCAGGATTACGTTGAATATTTAAGACAATATATGCATGTGACTTGTTGTG
AACACAGGGATAGTCCGTGGACTCCATGGGCAGGTCTGACTATAGACATG
TGTTGGGTGTGAAGGGGCTCATTGTCTACAGAAGGATATAGAAGAGAAAT
TAAATGAAGAAACTTTGGTAGGGAAGGCAAACCAACTGAAGACTACATCT
GGCATAAACTGTGTATGACAGATGCACATTATGACTAAGCAAAGATATCT
TAGTGCTTANGTTGGGAAGGCATGGGGACGAGAAGGAGTAGCCCTGCCCC
CAGCATTTACACATAGAACAGAGCAAAGCCTGGCACACTCCCCTTTCGGG
TCTGCATTCTCCCCTTTGCTGAAAGGAAGCTGCTTCCACCTCCTCCCCAG
CCAGAGGTAAAGGGGACAAAACCTCTGGAAAAGCCAGGGGTACGGTTTTG
AATGGAGGGGGGGTTTGTGTTAAATTTAAATTGGCGGCTTCTCCTACTTC
TCCCCTCTTTATTATCCCTTTCTTATCTTG

GTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCTGTCTTACAGGACTTCTCAGTTTAAGGAATGT
GTCACTTACATGATGTGCTATTATCAGGACAAGATTGTATACTTGTGAAG
TGTGGTTCCATAGATAGACATAGGATTCAAAGGGATTTCAGAGAGAATCT
CACAGATACAGAGAAAATTAGTCAAGAAGATTTCATGGAAGGGATATTTT
GGTGGATGTTTATGTGTAGTAAGAGGNTANNCNNANNANNNNNCNNNNTC
NNTANNTGGNGNNNANATTGTTTTTTATGNATGGAGAGGGTTNATGTATA
TATGATTTCTTGGATTAAGNTAAGGTGTTGGGGTTTTATTATAATTTGAG
TTGTTTTTGGAAAANTAATATTTTTTTAGGTATGTATTTGGTTTATTGTT
TGGTGGTTTAATTTTTTTTTTTTTTATAATTTTTTATTTGTTGTAAGATT
TTTATTGTTTTTTTTATGATTTTTTGTTATGTTTATGTTTTTTTTTATTT
GTTTTTTTTTTTTTAATGTTATTTATTGTGGGGGGTGTTTTTATTGTATT
TTTTTAAATTTTTATTTTATTTAGTTGTATTTATTTTTTTTTTTNGTTAT
TGTTTTTTTTTTTTTTTTTATTTTTTGGGTATTTTTAGTTTTTTTTAGAT
ATTGGTTTTTTTTTTTTTTTTTTTTTTATTTATTTTATTAATTTTAGTTT
AAATTTTTTATTGATTTATTGTTATATTGTATATTTTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no408_p20.b1 MSMg01no408_p20.b1 CHROMAT_FILE:
MSMg01no408_p20.b1 PHD_FILE: MSMg01no408_p20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:10 2005
         (465 letters)



>mm_chr5_103462070_103462934
          Length = 865

 Score =  853 bits (441), Expect = 0.0
 Identities = 456/461 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctgttggatatgcacacatgtgcatacacaactttatgatggcacagtcaaaaa 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctgttggacatgcacacatgtgcatacacaactttatgatggcacagtcaaaaa 264

                                                                       
Query: 65  tgtatgacatctcttttcaaactggttcctctgtgttttgttcccgttccaaagtaaagt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtatgacatctcttttcaaactggttcctctgtgttttgttcccgttccaaagtaaagt 324

                                                                       
Query: 125 tagtgtaaataaatgaacagtctttaagtttacctctttcccagacaccacagtcatatc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tagtgtaaataaatgaacagtctttaagtttacctctttcccagacaccacagtcatatc 384

                                                                       
Query: 185 cagaccccagttctaactagtctctatactcaggattacgttgaatatttaagacaatat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cagaccccagttctaactagtctctatactcaggattacgttgaatatttaagacaatat 444

                                                                       
Query: 245 atgcatgtgacttgttgtgaacacagggatagtccgtggactccatgggcaggtctgact 304
           ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 445 atgcatgtgacttgtcgtgaacacagggatagtctgtggactccatgggcaggtctgact 504

                                                                       
Query: 305 atagacatgtgttgggtgtgaaggggctcattgtctacagaaggatatagaagagaaatt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atagacatgtgttgggtgtgaaggggctcattgtctacagaaggatatagaagagaaatt 564

                                                                       
Query: 365 aaatgaagaaactttggtagggaaggcaaaccaactgaagactacatctggcataaactg 424
           |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 565 aaatgaagaaacgttggtagggaaggcaaaccaactgaagactacatctggcataaaccg 624

                                                    
Query: 425 tgtatgacagatgcacattatgactaagcaaagatatctta 465
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgtatgacagatgcacattatgactaagcaaagatatctta 665


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 865
Length adjustment: 10
Effective length of query: 455
Effective length of database: 855
Effective search space:   389025
Effective search space used:   389025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no408_p20.g1 MSMg01no408_p20.g1 CHROMAT_FILE:
MSMg01no408_p20.g1 PHD_FILE: MSMg01no408_p20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:10 2005
         (211 letters)



>mm_chr5_103633208_103633818
          Length = 611

 Score =  375 bits (194), Expect = e-109
 Identities = 206/210 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgtcttacaggacttctcagtttaaggaatgtgtcacttacatgatgtgctattatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 tctgtcttacaggacttctcagtttaaggaatgtgtcacttacatgatgtgctattatca 351

                                                                       
Query: 61  ggacaagattgtatacttgtgaagtgtggttccatagatagacataggattcaaagggat 120
           |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 350 ggacaagattgtatacttgtgaagtgtggttccatagacagacatagggttcaaagggat 291

                                                                       
Query: 121 ttcagagagaatctcacagatacagagaaaattagtcaagaagatttcatggaagggata 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 290 ttcagagagaatctcacaaatacagagaaaattagtcaagaagatttcatgcaagggata 231

                                         
Query: 181 ttttggtggatgtttatgtgtagtaagagg 210
           ||||||||||||||||||||||||||||||
Sbjct: 230 ttttggtggatgtttatgtgtagtaagagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 211
Length of database: 611
Length adjustment: 9
Effective length of query: 202
Effective length of database: 602
Effective search space:   121604
Effective search space used:   121604
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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