BAC Information

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BAC

Clone NameMSMg01-408P21
Chromosome5 (Build37)
Map Location 145,941,075 - 145,941,462
singlet/doubletsinglet
Overlap geneCpsf4
Upstream geneLmtk2, Bhlhb8, 2210010N04Rik, Bri3, Baiap2l1, 4930568B11Rik, Nptx2, EG621967, Tmem130, LOC100039427, Trrap, Smurf1, AW146299, EG231885, EG666992, 1700018F24Rik, Arpc1a, Arpc1b, Pdap1, Bud31, Ptcd1
Downstream geneAtp5j2, Zkscan14, Zkscan5, EG622116, Zfp655, LOC677270, EG666311, EG622127, LOC100039566, Cyp3a16, LOC100041375, LOC667065, Cyp3a41, Cyp3a44, Cyp3a11, Cyp3a25, LOC667098, LOC667104, LOC100041449
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-408P21.T7 (MSMg01no408_p21.b1)MSMg01-408P21.TJ (MSMg01no408_p21.g1)
ACCAG506582AG506583
length770797
length of high quality
(start - end)
324 (40 - 363)388 (68 - 455)
definitionCHROMAT_FILE: MSMg01no408_p21.b1 PHD_FILE: MSMg01no408_p21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:10 2005CHROMAT_FILE: MSMg01no408_p21.g1 PHD_FILE: MSMg01no408_p21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CTGGTGGAATCTTTGGTGCCACTTATGTATACTATAATGTCATCTGCAGA
TAGTGATATTTTTACTTCTTCCTTTCCAATTTGAATCCCTTTGATATCCT
TTTGTTGTATAATTCCTCTGGCTAGGACTTCCAGTACTACACTGTATATG
TAGGGAGAGAGTGGACAACCTTGTCTCGTCCCTGATTTTAGTGGGGTTCC
TTCAAGTTTCTCTCCATTTAGTGTGCTGTTGGCTACTCATTTGCAGTATA
TTGCTTTTATTATGTTTATGTATAGGCCTTGAATCCCTAATCTCTTTAAA
ACTTTTATCATGAACAGGCGATAGATTTTGTCAAACGCATTCTCAGAATC
TGATGAGATGATCATATAGGTTCTTTTTTTGAGTTTGTTTACATAGTGTA
TCACGCTGATGTACTTTCATAAATTGATCACTCCTCGCTTCCTTGACATA
GATTCTCATTTTTTCTCCCCTAATGCTCTTTTCCTTTCTTGCTCCTCTTT
AATTTCTTTGCTCCCTTCTCCACCTATCCCCTCCCATTTCTTCCATCCCT
TTATCTCTTCTGTTCCCTCCCTTTCTTTTTATTTCCCTCATATATCCTCC
TCTTTTTATCCACCCTATGGCCCGCTTGTTCCCCCTTTTTTTCCCCAATT
TATCCCCTCGTTTTGATTTCCTCTTTATCCCCGCTTTATTCCTCATTTTT
ACCCATTTTCCACCTTCACT
TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAGGTGCCGCAGGATATGAGAAATGTGTGGCGCT
TGGGTGGCAGAGCGTTCCTGGTAATTTCCAAAGATGGCATCCTAAAGTGT
CTTAGCTATCCTCTTGCTCCACCCAGCACCGAGCAGCAGTGTCTCCTTTA
TGATGCACACACTCAGGTCCTGAGACCCTAACAAGCGTGTGTGCCCGTTC
CTGGAAGTAGGGCTTCCTGGTTCCTTCTGATGGTCACATAGCCCAAGGGC
TTGCTGACTGCTAGCTAGACCTCCAGACCACTCATCCGGCAGCTGGATAC
TGACAGAATGCTACTGTGGCGGCCAGTACAGAGTTGACATGGGCATGGAG
AGCTGATAGGAAGATTGCACCAAGTTGTGGCCCTTTGCAATCTCCTGTCC
ATTTGTGCAGTGCTAGATCAAGGCTGTCCAGGCCCTACAGAAGGGCCTAG
TTAGGACCAGCGATAGCTCTGTCAGGTAACACTGGCAGCTCTGCCTCTCC
AGGCTGATTTATTACCACATCCCCCCTGATCCCGTGATCAATGTTTTGCC
CTTCAGATACTCTTTGGATATGCATTGCTCAAATTCCTTTTATCCAACCT
TTTTGCTCCGTACCTCCGCCCTATCCCTGTTTCCTTACCTTTTTGTCCCT
CCTTTGTTATTCCGCCATCTTTCAATCTCTTGTTTTGTCATCATTGGTTT
CTAGTTGCGGATCTCCTCTCTTGGTTTTTTATCCTCTATGCAATATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no408_p21.g1 MSMg01no408_p21.g1 CHROMAT_FILE:
MSMg01no408_p21.g1 PHD_FILE: MSMg01no408_p21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:10 2005
         (388 letters)



>mm_chr5_145940875_145941662
          Length = 788

 Score =  712 bits (368), Expect = 0.0
 Identities = 383/388 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggtgccgcaggatatgagaaatgtgtggcgcttgggtggcagagcgttcctggtaattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggtgccgcaggatatgagaaatgtgtggcgcttgggtggcagagcgttcctggtaattt 260

                                                                       
Query: 61  ccaaagatggcatcctaaagtgtcttagctatcctcttgctccacccagcaccgagcagc 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 ccaaagatggcatcctaaagtgtcttagctgtcctcttgctccacccagcaccgagcagc 320

                                                                       
Query: 121 agtgtctcctttatgatgcacacactcaggtcctgagaccctaacaagcgtgtgtgcccg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtgtctcctttatgatgcacacactcaggtcctgagaccctaacaagcgtgtgtgcccg 380

                                                                       
Query: 181 ttcctggaagtagggcttcctggttccttctgatggtcacatagcccaagggcttgctga 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcctggaagtagggcttcctggttccttctgatggtcacatagcccaagggcttgctga 440

                                                                       
Query: 241 ctgctagctagacctccagaccactcatccggcagctggatactgacagaatgctactgt 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 ctgctagctagacctccagaccactcatccggcagctggatactgacagaatgccactgt 500

                                                                       
Query: 301 ggcggccagtacagagttgacatgggcatggagagctgataggaagattgcaccaagttg 360
           ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 501 ggcggccaggacagagttgacatgggcatggagagctaataggaagattgcaccaagttg 560

                                       
Query: 361 tggccctttgcaatctcctgtccatttg 388
           ||||||||||||||||||||||||||||
Sbjct: 561 tggccctttgcaatctcctgtccatttg 588


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 788
Length adjustment: 9
Effective length of query: 379
Effective length of database: 779
Effective search space:   295241
Effective search space used:   295241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)