BAC Information

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BAC

Clone NameMSMg01-409A11
Chromosome5 (Build37)
Map Location 50,822,532 - 50,822,781
singlet/doubletsinglet
Overlap genenone
Upstream geneEG433885, LOC666223, Gpr125, EG637307
Downstream geneLOC100041015, LOC242987, EG624734, LOC666265, LOC100041059
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-409A11.T7 (MSMg01no409_a11.b1)MSMg01-409A11.TJ (MSMg01no409_a11.g1)
ACCAG506610AG506611
length784818
length of high quality
(start - end)
251 (71 - 321)244 (74 - 317)
definitionCHROMAT_FILE: MSMg01no409_a11.b1 PHD_FILE: MSMg01no409_a11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:14 2005CHROMAT_FILE: MSMg01no409_a11.g1 PHD_FILE: MSMg01no409_a11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAAAATCCGCGGA
ATTCATGTAAATAACAAAAGAAGCACATTTAAGCAAAAGGAAAGTGATCC
CAAGTAAAAAATCCAAGACAGAATAATGACTAATAATGACTGGAGAACAT
GGGCAAATGTAAAACAGTATAGACAATTCAAAGTCAATTAAAAGGTTTTC
TTCATTATGATGTGAATGTGTTTGTTTACACATTAATATGACCATGTGAG
GGCAGGTGCCCACTGAGCCCAACATCACTGGATTGCTCTGGAGCTAGCAT
TACAGGTGTTTATGAATGGCTTACTCCNGTCGGGACACAAACTAGGGGAA
CTCAGGTCCCCTCCTGGAGCAAGAAGTGTTCTCTTTTCTGAGTCATCCCT
CCAGTCACCTCCAAAATAATTTTTGATTATTGGAGAAAAACAGAAGTGTT
TTTGATGACTACAGGTCAATAGTATTGAATTGTGAAAAGGAATGTTGAAA
GTTAAGTGTTTAGTCTTCAAATGTCTGGGAAGATGATGGAGTTATTATTG
TTGTTAAATAGGAATGTTAAGGTGTATAGAATAACAGAGGGTAAATGGCC
ATATAACATCCAAATTTAGAAAGTTGAACAAAAATGATACTGAAAAAAAT
AGTTAACTAAATCCGTTACTGATGGATATGCATGTACTCAACACAATCCT
GTAATCCTAATTAGGATTACATATGGATGCCAATATATCATGTTAAAATG
AATTCTAAACGGTGCTTTTACCTATTTACCCAAA
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAGACTTTTATCGTGA
ATGGGTGTTGGAATTTTTCAAATGCTTTCTCCGCATCTTATGAGATGATC
ATGTGGTTTTTGTCTTTGAGTTTGTTTATATAGTGGATTATGTTGATGGA
TTTCCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTATT
CAGGATGCATTATTGTTTTAATGTGTTCTTGGATTCGGATAGCGAGAATT
TTGCTGAGTATTTTTGCTTTTACTCTTTTAAGGGAAACGGGCCTGAAGTT
CTCTACCTTTGTTGGATCTTTCTGTGGTTTAGGTATCACATTAATTGTTG
TCTTCCTAGTATTGATTGTGTAGAGTACCTTTCTACTTCTATTTTGTGGA
ATAGTTTGTGCAGAACTGATTATATATCCTTCTTGAAGTCTTGTTATATT
TCTGCAATTCTACTCATCTGGTCCTCGGCTTTTCTTTTGTTTGCTTGACT
CTCTATTGACTGCTCTCAATCTTCATAAGGAATTTATGTTTACTGTCTCA
TCATGTTTATTTCCTCGCTCGAATTTCTTTTTTGTCATCTGGGTTACTCT
TTTTATTCTATTTTATTCTTTTTTTTCCCCTCTTTTTTCTTTTTCTTTCT
CACCTCTTATATCTTACTTCGTTCCACAATCTTCCCATTTCTGCCTCCTG
CTGTTTTCTTTTTCTTTCCCTTTCGTTTTCTCTATCTATTATGCTCCCGA
TTTATATTTACCTTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no409_a11.b1 MSMg01no409_a11.b1 CHROMAT_FILE:
MSMg01no409_a11.b1 PHD_FILE: MSMg01no409_a11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:14 2005
         (251 letters)



>mm_chr5_50822410_50823060
          Length = 651

 Score =  476 bits (246), Expect = e-139
 Identities = 249/250 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagcacatttaagcaaaaggaaagtgatcccaagtaaaaaatccaagacagaataatgac 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 372 aagcacatttaagcaaaaggaaagtgatcccaagtaagaaatccaagacagaataatgac 313

                                                                       
Query: 61  taataatgactggagaacatgggcaaatgtaaaacagtatagacaattcaaagtcaatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 taataatgactggagaacatgggcaaatgtaaaacagtatagacaattcaaagtcaatta 253

                                                                       
Query: 121 aaaggttttcttcattatgatgtgaatgtgtttgtttacacattaatatgaccatgtgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 aaaggttttcttcattatgatgtgaatgtgtttgtttacacattaatatgaccatgtgag 193

                                                                       
Query: 181 ggcaggtgcccactgagcccaacatcactggattgctctggagctagcattacaggtgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ggcaggtgcccactgagcccaacatcactggattgctctggagctagcattacaggtgtt 133

                     
Query: 241 tatgaatggc 250
           ||||||||||
Sbjct: 132 tatgaatggc 123


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 651
Length adjustment: 9
Effective length of query: 242
Effective length of database: 642
Effective search space:   155364
Effective search space used:   155364
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)