Query= MSMg01no409_d17.b1 MSMg01no409_d17.b1 CHROMAT_FILE:
MSMg01no409_d17.b1 PHD_FILE: MSMg01no409_d17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:31 2005
(520 letters)
>mm_chr5_100918818_100919734
Length = 917
Score = 934 bits (483), Expect = 0.0
Identities = 508/517 (98%), Gaps = 3/517 (0%)
Strand = Plus / Minus
Query: 4 ggaattctagagctatcttttggcaacagaagagttaaactagaaattgatataaaatac 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 ggaattctagagctatcttttggcaacagaagagttaaactagaaattgatataaaatac 811
Query: 64 atagaaaatctccaaatggttaggtattaagtgctctctactattatctgtgagtggaag 123
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 atagaacatctccaaatggttaggtattaagtgctctctactattatctgtgagtggaag 751
Query: 124 atgaagtcccaagggctattgaggtgaatacataatagtaaacactgaccttaatggagg 183
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 750 atgaagtcccaagggctattgaggtgaatacataatagtaaacactgaccttggtggagg 691
Query: 184 acatttaaagtagcactggcgttcctcttgttagtttttttctttttcttgtcttaatgg 243
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct: 690 acatttaaagtagcactggc--tcctcttgttag-gtttttctttttcttgtcttaatgg 634
Query: 244 cttagttaggtagagagggcttgaccgtcagtcctcgtgccttgagagctttaatgctgg 303
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 633 cttagttaggtagagagggcttgaccggcagtcctcgtgccttgagagctttaatgctgg 574
Query: 304 gagcccgtgtgaccttcagcatgtttgggttgtccagttccttgccgtttgagtattttc 363
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 573 gagcccgtgtgaccttcagcatgtctgggttgtccagttccttgccgtttgagtattttc 514
Query: 364 ttgacactttgggggaagaagaaaacaaaactgtgtagtgctctgaaccacagcttgaaa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 ttgacactttgggggaagaagaaaacaaaactgtgtagtgctctgaaccacagcttgaaa 454
Query: 424 aattatgtctttctggagaagtcaagatagcacacatttaattttacaggcatactttta 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 aattatgtctttctggagaagtcaagatagcacacatttaattttacaggcatactttta 394
Query: 484 gaaatgtaattacaatatcaaagataccctccggggg 520
|||||||||||||||||||||||||||||||||||||
Sbjct: 393 gaaatgtaattacaatatcaaagataccctccggggg 357
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 917
Length adjustment: 10
Effective length of query: 510
Effective length of database: 907
Effective search space: 462570
Effective search space used: 462570
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no409_d17.g1 MSMg01no409_d17.g1 CHROMAT_FILE:
MSMg01no409_d17.g1 PHD_FILE: MSMg01no409_d17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:31 2005
(461 letters)
>mm_chr5_100702735_100703595
Length = 861
Score = 832 bits (430), Expect = 0.0
Identities = 454/462 (98%), Gaps = 2/462 (0%)
Strand = Plus / Plus
Query: 1 tttttatcttttcaatg-tcaaagggtcaaagaaccctttcaaaacctgtgtggcattag 59
||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttttatcttt-caaaggtcaaagggtcaaagaaccctttcaaaacctgtgtggcattag 259
Query: 60 gctttttccagctatcccagcctgtattcgaatttctgcagccagaacaatgtgaagcca 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gctttttccagctatcccagcctgtattcgaatttctgcagccagaacaatgtgaagcca 319
Query: 120 ttgaatttaattccatactgtcctgtatggcactgtccttgctgtatgccagtctatcca 179
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 320 ttgaatttaattccatactgtcctgtatggcactgtccttgctgtatgccactctagcca 379
Query: 180 gctctgttagactgtaagcccccatgacaagggccatttcttatacagctccctgctttc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gctctgttagactgtaagcccccatgacaagggccatttcttatacagctccctgctttc 439
Query: 240 ctcagtggcccataatggtttatgtgacctcaaagggagttgaccagaggctttacacaa 299
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ctcagtggcccataacggtttatgtgacctcaaagggagttgaccagaggctttacacaa 499
Query: 300 aaacaatggatgatttggtgggtgaaacctggatggaaacaatcagatgtttctaggttt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aaacaatggatgatttggtgggtgaaacctggatggaaacaatcagatgtttctaggttt 559
Query: 360 tactgtaattttctggtgcaaggttagaaatgcccacatgccatgtgacgttccataaat 419
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 taccgtaattttctggtgcaaggttagaaatgcccacatgccatgtgacgttccataaat 619
Query: 420 ctcaccatcaattaaatctgtttattcagtgacactgcaggt 461
||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 620 ctcaccatcgattaaatctgtttattcagtgacactgcaggt 661
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space: 383801
Effective search space used: 383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
