BAC Information

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BAC

Clone NameMSMg01-409D21
Chromosome5 (Build37)
Map Location 99,897,594 - 100,093,284
singlet/doubletdoublet
Overlap geneA930011G23Rik
Upstream gene1700007G11Rik, Bmp3, Prkg2, LOC100041680, Rasgef1b
Downstream geneLOC100040738, LOC666364, LOC100040763, LOC100040774, Hnrpd, 4930524J08Rik, Hnrpdl, Enoph1, BC062109, LOC666417, Sec31a, LOC100041797, Lin54, Cops4, Plac8, Coq2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-409D21.T7 (MSMg01no409_d21.b1)MSMg01-409D21.TJ (MSMg01no409_d21.g1)
ACCAG506773AG506774
length774783
length of high quality
(start - end)
488 (52 - 539)479 (77 - 555)
definitionCHROMAT_FILE: MSMg01no409_d21.b1 PHD_FILE: MSMg01no409_d21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:31 2005CHROMAT_FILE: MSMg01no409_d21.g1 PHD_FILE: MSMg01no409_d21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,897,594 - 99,898,078)(100,092,903 - 100,093,284)
sequence
NNNNAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAACTGTATCTCGCGAGACCCATAGAGTATGCTGACAGCA
CAGCCTTTGTGGTACAAGCTCATTCAAAAACCCTGAATTTCTGAGGCTGT
CACATAGCAAATACTGAACTAACAAATGGCAGAATCCGTGTGATTTGTGT
CAGTCCATCCAGGAGATAGCCTAATACCTGGCATGCAGCGAGGTTCAGAA
GGTCTTGTCAAAGGGCAGGCCGGATGGGTAATCTTCTGAGGTCTAGGCTT
GCACTGGTACTGATGTTAAAGCAAGGCAAAGCTGGAGTGTGAAAACAACG
GCAGAAATGTCCCCATCCTGACCTTGCACAGTGCTGTGTGTTGCTTACTA
CTCTCTTCCCTGCGACCAATGACCCGGCAGTAGCAAGTGAGGACTAAGCT
ACTGGTTCATGGCTGCCAGGGGCCTGAATGGTGGCTTGTTTAAACTTTAG
TGGACTGGATACTAAGAACTCAGACTGGAAGTGAGGCCGGATTACAGCCC
TCAAAGGTTCACCTCCAGTGACCTACCTCTACCAGCCATGTTTCCTGCCT
CAAGGCTCTATAATTTCCTAAAACACCCCCCAAGGACAAAAGCTTCAATA
CACTACCTGATGAAGAAAATTGCCATCTAACCCATAAAGCCCGGTTATTG
GGAAACATATCCGCCAAAATGGGTCCCCCAAAATGCCCACTTTGAAACAC
AAAAGGAAAACCATCCTTTCTCCC
NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTAAGACAAATGCCTGGAAATAG
TGCCAAAAAGTAATTCTGAAAATTGTATCTTCAACTTCAGTGCACTTTAA
CTTGACTAAAATAAAGGGAAAGAAAGGGGAGGTTAGGCCCCCCCAACACA
CACATACACACACACACATGGATGTACACACACATGCACACACACATACA
CACATATACATGCACACACACGTACACACACATGCATACTCACAACATGC
ATGCACACATACACACATACACATGCGCACACACACATATACACACATAT
GCACGCACACACACACACACACTCCAAAAGCACACTCTAAAAGCTAGAAT
ATAGGAAATAGAAAGAAAGATTAATGAAATGGACTGGGACCAACAGATGA
AAAAGAAGTTAGCTTGAGCATTTTTGCTTTCAATAGCATGGATGTAAAAG
CAGGCACTTCCCATGTGTGCTAACATTATTCAAAATTTAGTTCTACCCAT
CCATGCATAGAGACGTCATTTTAATCATTCCGACATATGATAATGCATCC
ATGAAGTATGAAGCCAATAATCTCTGGTTTCGTTCCCGGGCCCATATTTT
TTCCCTGGGGAAAATAAAAGGGCCCGTTGGCCGGGGTTTTCTTCCCCAAA
TTTAGTTCCGGAAGATTGGGTATAATGGATTTCCTTTCACATCACAAACT
TCCGGTTGTATTTTCGTGGGTGGCGCGAATCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no409_d21.b1 MSMg01no409_d21.b1 CHROMAT_FILE:
MSMg01no409_d21.b1 PHD_FILE: MSMg01no409_d21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:31 2005
         (488 letters)



>mm_chr5_99897390_99898280
          Length = 891

 Score =  868 bits (449), Expect = 0.0
 Identities = 475/485 (97%), Gaps = 3/485 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaactgtatctcgcgagacccatagagtatgctgacagca---cagcctttgtgg 61
           ||||||||||||||| || ||||||||||||||||||||||||||   ||||||| ||||
Sbjct: 205 gaattcaactgtatcccgtgagacccatagagtatgctgacagcacagcagccttcgtgg 264

                                                                       
Query: 62  tacaagctcattcaaaaaccctgaatttctgaggctgtcacatagcaaatactgaactaa 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tacaagctcattcaaaaaccctgaatttctgaggctgtcacatagcaaatactgaactaa 324

                                                                       
Query: 122 caaatggcagaatccgtgtgatttgtgtcagtccatccaggagatagcctaatacctggc 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caaatggcagaatccgtgtgatttgtgtcagtccatccaggagatagcctaatacctggc 384

                                                                       
Query: 182 atgcagcgaggttcagaaggtcttgtcaaagggcaggccggatgggtaatcttctgaggt 241
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atgcagcaaggttcagaaggtcttgtcaaagggcaggccggatgggtaatcttctgaggt 444

                                                                       
Query: 242 ctaggcttgcactggtactgatgttaaagcaaggcaaagctggagtgtgaaaacaacggc 301
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 445 ctaggcttgcactggtactgatgttaaagcaaggcaaagctggagtgtgaaaacaatggc 504

                                                                       
Query: 302 agaaatgtccccatcctgaccttgcacagtgctgtgtgttgcttactactctcttccctg 361
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 505 agaaatgtccccatcctgaccttgcacagtgctatgtgttgcttactactctcttccctg 564

                                                                       
Query: 362 cgaccaatgacccggcagtagcaagtgaggactaagctactggttcatggctgccagggg 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cgaccaatgacccggcagtagcaagtgaggactaagctactggttcatggctgccagggg 624

                                                                       
Query: 422 cctgaatggtggcttgtttaaactttagtggactggatactaagaactcagactggaagt 481
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cctgaatggtggcttgttcaaactttagtggactggatactaagaactcagactggaagt 684

                
Query: 482 gaggc 486
           |||||
Sbjct: 685 gaggc 689


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 891
Length adjustment: 10
Effective length of query: 478
Effective length of database: 881
Effective search space:   421118
Effective search space used:   421118
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no409_d21.g1 MSMg01no409_d21.g1 CHROMAT_FILE:
MSMg01no409_d21.g1 PHD_FILE: MSMg01no409_d21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:31 2005
         (479 letters)



>mm_chr5_100092406_100093284
          Length = 879

 Score =  611 bits (316), Expect = e-179
 Identities = 355/382 (92%), Gaps = 22/382 (5%)
 Strand = Plus / Minus

                                                                       
Query: 120 acacacacatacacacacacacatggatgtacacacacatgcacacacacatacacacat 179
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 879 acacacacatacacacacacacacggatgtacacacacatgcacacacacatacacacat 820

                                                                       
Query: 180 atacatgcacacacacgtacacacacatgcatactcacaacatgcatgcacacatacaca 239
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 acacatgcacacacacgtacacacacatgcatactcacaacatgcatgcacacatacaca 760

                                                                       
Query: 240 catacacatgcgcacacacacatatacacacatatgcacg-------------------- 279
           ||||||||||||||||||||||||||||||||||||||||                    
Sbjct: 759 catacacatgcgcacacacacatatacacacatatgcacgcacacacacacacacacaca 700

                                                                       
Query: 280 --cacacacacacacacactccaaaagcacactctaaaagctagaatataggaaatagaa 337
             ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct: 699 cacacacacacacacacacaccaaaagcacactctaaaagctagaatataggaaatggaa 640

                                                                       
Query: 338 agaaagattaatgaaatggactgggaccaacagatgaaaaagaagttagcttgagcattt 397
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 agaaagattaatgaaatggactgggaccaacagatgaaaaagaagttagcttgagcattt 580

                                                                       
Query: 398 ttgctttcaatagcatggatgtaaaagcaggcacttcccatgtgtgctaacattattcaa 457
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 579 ttgctttcaatagcatggatgtaaaagcaggcacttcccatgtgtgttaacattattcaa 520

                                 
Query: 458 aatttagttctacccatccatg 479
           ||||||||||||||||||||||
Sbjct: 519 aatttagttctacccatccatg 498


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 81
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space:   407561
Effective search space used:   407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)