Query= MSMg01no409_d21.b1 MSMg01no409_d21.b1 CHROMAT_FILE:
MSMg01no409_d21.b1 PHD_FILE: MSMg01no409_d21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:31 2005
(488 letters)
>mm_chr5_99897390_99898280
Length = 891
Score = 868 bits (449), Expect = 0.0
Identities = 475/485 (97%), Gaps = 3/485 (0%)
Strand = Plus / Plus
Query: 5 gaattcaactgtatctcgcgagacccatagagtatgctgacagca---cagcctttgtgg 61
||||||||||||||| || |||||||||||||||||||||||||| ||||||| ||||
Sbjct: 205 gaattcaactgtatcccgtgagacccatagagtatgctgacagcacagcagccttcgtgg 264
Query: 62 tacaagctcattcaaaaaccctgaatttctgaggctgtcacatagcaaatactgaactaa 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tacaagctcattcaaaaaccctgaatttctgaggctgtcacatagcaaatactgaactaa 324
Query: 122 caaatggcagaatccgtgtgatttgtgtcagtccatccaggagatagcctaatacctggc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caaatggcagaatccgtgtgatttgtgtcagtccatccaggagatagcctaatacctggc 384
Query: 182 atgcagcgaggttcagaaggtcttgtcaaagggcaggccggatgggtaatcttctgaggt 241
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atgcagcaaggttcagaaggtcttgtcaaagggcaggccggatgggtaatcttctgaggt 444
Query: 242 ctaggcttgcactggtactgatgttaaagcaaggcaaagctggagtgtgaaaacaacggc 301
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 445 ctaggcttgcactggtactgatgttaaagcaaggcaaagctggagtgtgaaaacaatggc 504
Query: 302 agaaatgtccccatcctgaccttgcacagtgctgtgtgttgcttactactctcttccctg 361
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 505 agaaatgtccccatcctgaccttgcacagtgctatgtgttgcttactactctcttccctg 564
Query: 362 cgaccaatgacccggcagtagcaagtgaggactaagctactggttcatggctgccagggg 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cgaccaatgacccggcagtagcaagtgaggactaagctactggttcatggctgccagggg 624
Query: 422 cctgaatggtggcttgtttaaactttagtggactggatactaagaactcagactggaagt 481
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cctgaatggtggcttgttcaaactttagtggactggatactaagaactcagactggaagt 684
Query: 482 gaggc 486
|||||
Sbjct: 685 gaggc 689
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 891
Length adjustment: 10
Effective length of query: 478
Effective length of database: 881
Effective search space: 421118
Effective search space used: 421118
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no409_d21.g1 MSMg01no409_d21.g1 CHROMAT_FILE:
MSMg01no409_d21.g1 PHD_FILE: MSMg01no409_d21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:31 2005
(479 letters)
>mm_chr5_100092406_100093284
Length = 879
Score = 611 bits (316), Expect = e-179
Identities = 355/382 (92%), Gaps = 22/382 (5%)
Strand = Plus / Minus
Query: 120 acacacacatacacacacacacatggatgtacacacacatgcacacacacatacacacat 179
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 879 acacacacatacacacacacacacggatgtacacacacatgcacacacacatacacacat 820
Query: 180 atacatgcacacacacgtacacacacatgcatactcacaacatgcatgcacacatacaca 239
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 acacatgcacacacacgtacacacacatgcatactcacaacatgcatgcacacatacaca 760
Query: 240 catacacatgcgcacacacacatatacacacatatgcacg-------------------- 279
||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 catacacatgcgcacacacacatatacacacatatgcacgcacacacacacacacacaca 700
Query: 280 --cacacacacacacacactccaaaagcacactctaaaagctagaatataggaaatagaa 337
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct: 699 cacacacacacacacacacaccaaaagcacactctaaaagctagaatataggaaatggaa 640
Query: 338 agaaagattaatgaaatggactgggaccaacagatgaaaaagaagttagcttgagcattt 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 agaaagattaatgaaatggactgggaccaacagatgaaaaagaagttagcttgagcattt 580
Query: 398 ttgctttcaatagcatggatgtaaaagcaggcacttcccatgtgtgctaacattattcaa 457
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 579 ttgctttcaatagcatggatgtaaaagcaggcacttcccatgtgtgttaacattattcaa 520
Query: 458 aatttagttctacccatccatg 479
||||||||||||||||||||||
Sbjct: 519 aatttagttctacccatccatg 498
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 81
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space: 407561
Effective search space used: 407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|