Query= MSMg01no409_h06.b1 MSMg01no409_h06.b1 CHROMAT_FILE:
MSMg01no409_h06.b1 PHD_FILE: MSMg01no409_h06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:49 2005
(492 letters)
>mm_chr5_107536627_107537518
Length = 892
Score = 936 bits (484), Expect = 0.0
Identities = 487/488 (99%)
Strand = Plus / Plus
Query: 5 gaattcacagtaactgaaattaaacatttcataaggagtaacttaaatttctctaaaata 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacagtaactgaaattaaacatttcataaggagtaacttaaatttctctaaaata 264
Query: 65 tttaaatatatctttatacagaatttttgtagtaaaatatagctataagtgatttaaaga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttaaatatatctttatacagaatttttgtagtaaaatatagctataagtgatttaaaga 324
Query: 125 ctctagtcttccttgaagacatctttaaacatttttttatacatagaatatacttatcag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctctagtcttccttgaagacatctttaaacatttttttatacatagaatatacttatcag 384
Query: 185 ttacattcggctgaaggttaggcaaagcgcattatttttaaacacaggtagcatgatcca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttacattcggctgaaggttaggcaaagcgcattatttttaaacacaggtagcatgatcca 444
Query: 245 ggtcctccccaaagacaccttcatgttaaaaaccaacgaactagagaaaagtatttctct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggtcctccccaaagacaccttcatgttaaaaaccaacgaactagagaaaagtatttctct 504
Query: 305 agtctcaaaccatccatgtgggaaatctaaagtatttcaatgtatctatgcatcggttgg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agtctcaaaccatccatgtgggaaatctaaagtatttcaatgtatctatgcatcggttgg 564
Query: 365 agaccctcagccctgaagaaatctgctttggttcaaattttcccaattgaatagaagctg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agaccctcagccctgaagaaatctgctttggttcaaattttcccaattgaatagaagctg 624
Query: 425 ggccactctggtcagtcagacgaggactcatcgactgagagattgtccgtatcccttcac 484
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 625 ggccactctggtcagtcagacgagggctcatcgactgagagattgtccgtatcccttcac 684
Query: 485 acgctgct 492
||||||||
Sbjct: 685 acgctgct 692
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space: 425124
Effective search space used: 425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no409_h06.g1 MSMg01no409_h06.g1 CHROMAT_FILE:
MSMg01no409_h06.g1 PHD_FILE: MSMg01no409_h06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:49 2005
(407 letters)
>mm_chr5_107736469_107737274
Length = 806
Score = 756 bits (391), Expect = 0.0
Identities = 403/407 (99%), Gaps = 1/407 (0%)
Strand = Plus / Minus
Query: 1 tcagactattatttattgattggccaatttactttttttatatggagaacattttttttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 606 tcagactattatttattgattggccaatttactttttttatatggagaaca-tttttttc 548
Query: 61 cctttgctactttttcatatggctactgttatttatgaatggcctaatttgctttatcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 cctttgctactttttcatatggctactgttatttatgaatggcctaatttgctttatcaa 488
Query: 121 agtgaaaatatgatttctctctcttgtgcacagacactgcttccaatgcagagcaagtga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 agtgaaaatatgatttctctctcttgtgcacagacactgcttccaatgcagagcaagtga 428
Query: 181 gtgtcactttaagtttcttctcagatgtttgccacatgtggcgcttagttagcatggaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gtgtcactttaagtttcttctcagatgtttgccacatgtggcgcttagttagcatggaga 368
Query: 241 ataatgagtccagagtgacataccccagttccctcttgaaacatcttttcatgaactggc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ataatgagtccagagtgacataccccagttccctcttgaaacatcttttcatgaactggc 308
Query: 301 tgcatgttttagtagatgctattatggtcatgctcaagccttgtgcaggcaactggtaca 360
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 307 tgcatgttttaatagatgctattatggtcatgctcaagccttgtgtaggcaactggtaca 248
Query: 361 aactgacttctgcggcagttcctgctttcccctgatcactaccaacc 407
||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 247 aactgacttctgcggcagttcctgctttcccctgaccactaccaacc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 806
Length adjustment: 9
Effective length of query: 398
Effective length of database: 797
Effective search space: 317206
Effective search space used: 317206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|