BAC Information

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BAC

Clone NameMSMg01-409H06
Chromosome5 (Build37)
Map Location 107,536,831 - 107,737,074
singlet/doubletdoublet
Overlap geneTgfbr3, LOC666518
Upstream geneLOC546882, LOC671295, 4930458A03Rik, Barhl2, EG666892, LOC100042389, Zfp644, LOC100042400, EG666922, Hfm1, Cdc7
Downstream geneBrdt, LOC666535, Abhd7, 4921521K07Rik, LOC72342, 1700028K03Rik, Glmn, AW060207, Gfi1, LOC100042473, Evi5, 1700013N18Rik, Rpl5, 2900024C23Rik, LOC675566, Mtf2, Tmed5, Ccdc18, EG633606, LOC666614, Dr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-409H06.T7 (MSMg01no409_h06.b1)MSMg01-409H06.TJ (MSMg01no409_h06.g1)
ACCAG506934AG506935
length800789
length of high quality
(start - end)
492 (45 - 536)407 (66 - 472)
definitionCHROMAT_FILE: MSMg01no409_h06.b1 PHD_FILE: MSMg01no409_h06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:49 2005CHROMAT_FILE: MSMg01no409_h06.g1 PHD_FILE: MSMg01no409_h06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,536,831 - 107,537,318)(107,736,669 - 107,737,074)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACAGTAACTGAAATTAAACATTTCATAAGGAGTAACTTAAATTTCT
CTAAAATATTTAAATATATCTTTATACAGAATTTTTGTAGTAAAATATAG
CTATAAGTGATTTAAAGACTCTAGTCTTCCTTGAAGACATCTTTAAACAT
TTTTTTATACATAGAATATACTTATCAGTTACATTCGGCTGAAGGTTAGG
CAAAGCGCATTATTTTTAAACACAGGTAGCATGATCCAGGTCCTCCCCAA
AGACACCTTCATGTTAAAAACCAACGAACTAGAGAAAAGTATTTCTCTAG
TCTCAAACCATCCATGTGGGAAATCTAAAGTATTTCAATGTATCTATGCA
TCGGTTGGAGACCCTCAGCCCTGAAGAAATCTGCTTTGGTTCAAATTTTC
CCAATTGAATAGAAGCTGGGCCACTCTGGTCAGTCAGACGAGGACTCATC
GACTGAGAGATTGTCCGTATCCCTTCACACGCTGCTTCCATCAGCAACGC
TTCAACGTTGACGTTTTCATTCATGAAGGGCTGGGCAACACTGCCTGAAT
GTAAAGGCAGGGGGCTTTTGCCATGGCTATTTCTGGGCAGGACTTATCTT
GTTCTTACTTAGGGAAACCTCAATTCGGTTTGCTGGTTTAGCCCGCAATT
TCTACCTTATATCTTACCATCTTTTTTTGACTCCAATCTCTTTCTCGTAT
ACCTCTTACTTTCGCCTCTCACCTTTTTACTAATAATTATCGTGCTTCTN

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCAGACTATTATTTATTGATTGGCCAATTTACTTT
TTTTATATGGAGAACATTTTTTTTCCCTTTGCTACTTTTTCATATGGCTA
CTGTTATTTATGAATGGCCTAATTTGCTTTATCAAAGTGAAAATATGATT
TCTCTCTCTTGTGCACAGACACTGCTTCCAATGCAGAGCAAGTGAGTGTC
ACTTTAAGTTTCTTCTCAGATGTTTGCCACATGTGGCGCTTAGTTAGCAT
GGAGAATAATGAGTCCAGAGTGACATACCCCAGTTCCCTCTTGAAACATC
TTTTCATGAACTGGCTGCATGTTTTAGTAGATGCTATTATGGTCATGCTC
AAGCCTTGTGCAGGCAACTGGTACAAACTGACTTCTGCGGCAGTTCCTGC
TTTCCCCTGATCACTACCAACCTCCTCTGTCAGACCACGATGGGGCTTAC
GTGATTGCCCGACATGTATTGATTCCCTCCTGCCCTGAGTATTGTTAAAG
CTTTCATGTTTGTAACCTATACCCTTCATCTTCCTTTGGTATTTTTGATT
CCCCTGGTTCTTGTATTATTTCTTTTTTTCTTCGCCTCCTTTTTTAACAC
TTTATTTGCCATCCCTTAATTTCTCTCATATGCCACCTTTCTTTATCTCT
CTCCATCCTTTTTTTATGAAACCTCTTTCTTTTTCTTGTTTTTTCTTCAT
CCCACTACACATTCCCTGATCTTGCTTCCTTTACCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no409_h06.b1 MSMg01no409_h06.b1 CHROMAT_FILE:
MSMg01no409_h06.b1 PHD_FILE: MSMg01no409_h06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:49 2005
         (492 letters)



>mm_chr5_107536627_107537518
          Length = 892

 Score =  936 bits (484), Expect = 0.0
 Identities = 487/488 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacagtaactgaaattaaacatttcataaggagtaacttaaatttctctaaaata 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacagtaactgaaattaaacatttcataaggagtaacttaaatttctctaaaata 264

                                                                       
Query: 65  tttaaatatatctttatacagaatttttgtagtaaaatatagctataagtgatttaaaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttaaatatatctttatacagaatttttgtagtaaaatatagctataagtgatttaaaga 324

                                                                       
Query: 125 ctctagtcttccttgaagacatctttaaacatttttttatacatagaatatacttatcag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctctagtcttccttgaagacatctttaaacatttttttatacatagaatatacttatcag 384

                                                                       
Query: 185 ttacattcggctgaaggttaggcaaagcgcattatttttaaacacaggtagcatgatcca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttacattcggctgaaggttaggcaaagcgcattatttttaaacacaggtagcatgatcca 444

                                                                       
Query: 245 ggtcctccccaaagacaccttcatgttaaaaaccaacgaactagagaaaagtatttctct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggtcctccccaaagacaccttcatgttaaaaaccaacgaactagagaaaagtatttctct 504

                                                                       
Query: 305 agtctcaaaccatccatgtgggaaatctaaagtatttcaatgtatctatgcatcggttgg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agtctcaaaccatccatgtgggaaatctaaagtatttcaatgtatctatgcatcggttgg 564

                                                                       
Query: 365 agaccctcagccctgaagaaatctgctttggttcaaattttcccaattgaatagaagctg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agaccctcagccctgaagaaatctgctttggttcaaattttcccaattgaatagaagctg 624

                                                                       
Query: 425 ggccactctggtcagtcagacgaggactcatcgactgagagattgtccgtatcccttcac 484
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 625 ggccactctggtcagtcagacgagggctcatcgactgagagattgtccgtatcccttcac 684

                   
Query: 485 acgctgct 492
           ||||||||
Sbjct: 685 acgctgct 692


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space:   425124
Effective search space used:   425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no409_h06.g1 MSMg01no409_h06.g1 CHROMAT_FILE:
MSMg01no409_h06.g1 PHD_FILE: MSMg01no409_h06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:49 2005
         (407 letters)



>mm_chr5_107736469_107737274
          Length = 806

 Score =  756 bits (391), Expect = 0.0
 Identities = 403/407 (99%), Gaps = 1/407 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagactattatttattgattggccaatttactttttttatatggagaacattttttttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 606 tcagactattatttattgattggccaatttactttttttatatggagaaca-tttttttc 548

                                                                       
Query: 61  cctttgctactttttcatatggctactgttatttatgaatggcctaatttgctttatcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 cctttgctactttttcatatggctactgttatttatgaatggcctaatttgctttatcaa 488

                                                                       
Query: 121 agtgaaaatatgatttctctctcttgtgcacagacactgcttccaatgcagagcaagtga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 agtgaaaatatgatttctctctcttgtgcacagacactgcttccaatgcagagcaagtga 428

                                                                       
Query: 181 gtgtcactttaagtttcttctcagatgtttgccacatgtggcgcttagttagcatggaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gtgtcactttaagtttcttctcagatgtttgccacatgtggcgcttagttagcatggaga 368

                                                                       
Query: 241 ataatgagtccagagtgacataccccagttccctcttgaaacatcttttcatgaactggc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ataatgagtccagagtgacataccccagttccctcttgaaacatcttttcatgaactggc 308

                                                                       
Query: 301 tgcatgttttagtagatgctattatggtcatgctcaagccttgtgcaggcaactggtaca 360
           ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 307 tgcatgttttaatagatgctattatggtcatgctcaagccttgtgtaggcaactggtaca 248

                                                          
Query: 361 aactgacttctgcggcagttcctgctttcccctgatcactaccaacc 407
           ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 247 aactgacttctgcggcagttcctgctttcccctgaccactaccaacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 806
Length adjustment: 9
Effective length of query: 398
Effective length of database: 797
Effective search space:   317206
Effective search space used:   317206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)