BAC Information

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BAC

Clone NameMSMg01-409L23
Chromosome5 (Build37)
Map Location 74,107,162 - 74,107,598
singlet/doubletsinglet
Overlap genenone
Upstream geneTxk, Tec, Slain2, Slc10a4, LOC667127, Fryl, Ociad1, Ociad2, LOC667154, LOC100042205, C130090K23Rik, LOC627733, Dcun1d4, BC031901, Sgcb, Spata18
Downstream geneUsp46, 2700023E23Rik, Rasl11b, Scfd2, Fip1l1, Lnx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-409L23.T7 (MSMg01no409_l23.b1)MSMg01-409L23.TJ (MSMg01no409_l23.g1)
ACCAG507159AG507160
length815766
length of high quality
(start - end)		440 (53 - 492)441 (75 - 515)
definitionCHROMAT_FILE: MSMg01no409_l23.b1 PHD_FILE: MSMg01no409_l23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:13 2005CHROMAT_FILE: MSMg01no409_l23.g1 PHD_FILE: MSMg01no409_l23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTTTCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAGGGCCCCTGCCTCCTCCAGGTGTAGTCAAGAAGCAAG
TCTGGAGGTCAAGGTCTGAGTGGGTGTACCCTGCTGGATATATACATTCT
AAGGAGGGGCACAGAGAAGGACAGTCAGGGCAGAACCCTTAAACTGTGCC
ATAGTGCACACCTCTTGCCTGAATCAAAGCAAACTCTGCCACCACCAGGT
CTGTAGGTGCTGTGCTGTGTACTGTGTATGGTTACTGTCTTGCTTTCTCT
CACTATACCAAAATACCTGAGGATGAATACTATGCAGAGAAAAGAGGTTT
GTTTATCTCAGATTTTAGAAGCTGAAAGTTCAAACGGTGTGGTGCTGACT
GACTTTGGTGAACTACCCTCCCCCTGTGTGTCAGAATATGGAGGGCAACC
TCACATTGGGAACACTGTCTAAAGAAACCATATGGTGACACAGTAAGTCA
GAGATCTGGGACAGGCCAGGCCTTGACCTTTTTATAACCACCTGAGCCTG
TCTAAAACAAATGGGGATCCTTATAAAAACGGCCTTAATACCAGGATTTG
GTGCCCCCCGAAGAACCCACACACCCTTCCTCTTGGGGGGGTTACTCCTT
ATTATGATCCTCTCCCCCTCTCACCTTGGGGTCTTATAGTTTTGTATCCC
TTCCTTTTGGTTTTACCAAGTATCATATCCTATGACTTTCTCCCACTCTC
AATCTATCTCTGATCCCCTCACCTAAAATATAAGTTATAATTGCTGGCAG
CCGTCTCCTCTCCCA

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGCATCCTTGGCTGTGATGATTAATC
TTGTATGTCAACCTCTTGGCCCCTGGGTGTGCAATTTACTTGGTCAAGCA
TTATTTTGGATTTGTCTGTAGCATAGTTTGGTTGCAATGACCATTTGGTT
TGATAAGATGAATTAAGCAGATTGCTATCCACCACGTGGGTGGTTTTCCT
CTAATTCATTAAAGACCTAGAAGAAAAAGGCTGAGCTCCCTCCCCCGCCC
CCCGTGCCCCACCTCCACCCCAACACAGTCAAACACACACAGAGAGGGCA
CTCTTGCCTGGCCACCTTTAGAATTGAATGGAAACTTCATGCTGCTCTTG
GGACTTTGGTCTTAGCATTGGAAATGCACAGTTAGTTCTCTAAGGTCTAC
AGCTTGCTGACAACAGATGTTGGAATGTTGAGACTTGTCAGCTTCCAGAA
CTGCATCAGTCAGTTTGTTAGAATCAACACCTAGGTGAGGGGGAGGTACT
CTGTCCCTGTCTAACCTACCTGGAGTGCCTTAATTAGGGTTTCTTTGGTG
TTGATAGACCCCTTGCTCAATTTCCTTTCTATCTTTATTTATGTTCAGTT
TTATATGTTTTCCGGCTATATGGCCTAAATGTTCTTTTGTGTTTTTTTAT
GAGTTTCTCTCCTTTCTATTTCTTCTTATTTTTCGTGTCTTTATACCATT
TTTCAACTATCTCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no409_l23.b1 MSMg01no409_l23.b1 CHROMAT_FILE:
MSMg01no409_l23.b1 PHD_FILE: MSMg01no409_l23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:13 2005
         (440 letters)



>mm_chr5_74106959_74107798
          Length = 840

 Score =  739 bits (382), Expect = 0.0
 Identities = 424/438 (96%), Gaps = 2/438 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagggcccctgcctcctccaggtgtagtcaagaagcaagtctggaggtcaaggt 63
           |||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagggcccctgggtcctccgggtgtagtcaagaagcaagtctggaggtcaaggt 263

                                                                       
Query: 64  ctgagtgggtgtaccctgctggatatatacattctaaggaggggcacagagaaggacagt 123
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 264 ctgagtgggtgtaccctgctggatatgtacattctaaggaggggcacagagaaggacagt 323

                                                                       
Query: 124 cagggcagaacccttaaactgtgccatagtgcacacctcttgcctgaatcaaagcaaact 183
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 324 cagggcagaacccttaaactgtgccatagtgcacacctcttgcctgaatcaaagcaaatt 383

                                                                       
Query: 184 ctgccaccaccaggtctgtaggtgctgtgctgtgtactgtgtatggttactgtcttgctt 243
           ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 384 ctgccaccatcaggtctgtaggtgctgtgctgtgtactgtgtatggctactgtcttgctt 443

                                                                       
Query: 244 tctctcactataccaaaatacctgaggatgaatactatgcagagaaaagaggtttgttta 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tctctcactataccaaaatacctgaggatgaatactatgcagagaaaagaggtttgttta 503

                                                                       
Query: 304 tctcagattttagaagctgaaagttcaaacggtgtggtgctgactgactttggtgaacta 363
           |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct: 504 tctcagattttagaagctgaaagtccaaacggtgtggtgctgactgactttggtgaacca 563

                                                                       
Query: 364 ccctccccctgtgtgtcagaatatggagggcaacctcacattgggaacactgtcta-aag 422
           |||||||||  ||||||||||||||||||||||||||||| ||||||||||||| | |||
Sbjct: 564 ccctcccccaatgtgtcagaatatggagggcaacctcacagtgggaacactgtc-agaag 622

                             
Query: 423 aaaccatatggtgacaca 440
           ||||||||||||||||||
Sbjct: 623 aaaccatatggtgacaca 640


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space:   358161
Effective search space used:   358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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