ATCTTGTGNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAG
AGAGATCCGCGGAATTCTATAAAGTTTCTAATTTCTTTCTTTCTTTTTTT
TTCCCTGACCCAGAAATCATTGAGTAAAAGAAGTGTTCAATTTCCAAGAG
TGTGTAGGCTTTCTTGTGTTTCTTTTGTTGTTGAAGACACCTTAAATTCA
TAGTGATCTGTTAAGCTACAAGACATTTTTTTTTCAATTTTCTTGTATCT
GTTGAGGTTCGCTTATTGGCCAGTTTATATGGTCAATTTTGGAGAAAGAT
ACATGAGATGCTGAGAAGGAGATAATATTCTTTTATATTTGGGTGAAATA
TTCTATAGATGTCTGGTAGGTCCATTTGATTCATAATGTCTGTTAGTTTC
ATTATTTCTCTGTTTAGTTTCTGTCTGGATGACCTATCATTTGGTAAGAG
TGAGGTGTTGAAGTCTCCAACTATTAATGTGTGGGTTCAGTGTGTGACTT
AAACTTTAACAATGTCTCTTTTACCAATGTTGATGCCCTTGTGTTTGGGA
TGTAAATGCCTCGACCCGTTATACTATCTTGGTATTTTTTTCTCTTCTGT
AGACCATTGTCTTTTCTTTCCATCTTTGCTCTCCCTTTCTTCTTCCCTTC
ACCCAATATTTTTTTTTTTTTCGCTTATTCCCATCTCTCTCCTCTCGTCC
TCTTTTCCTACCTCCTATACCCTTATACTTTG

CGAAATACTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGAAACCTTGGAAA
CTGAGCAAATAGGATCTTCTTTGTGAGTCCTAACCTTTTGCTAACTCACA
TTACTCTGAATGACCCAAACCTAGCACAAGGTCAGCCTCAAACATCTAAG
TCAAAGACATATTCCCTGCAGTAGACAGTGTGATTGGGGGTCAGCTCAGG
AGCCTAGGATAAGCTGGTGATTGACTGCCCTTCAATCCTGCTCAGTGGCA
CAAAGAACACTTCTTTTAGGAATGGGGAAGTGTTGACAGCCCACCTGAGC
TGCATGCTGCCCCTCAGCTGAGGTATTCACTTTGTAGGAGCCATGGTATC
TTAAACATCACAAGCATCCTTACTAGATAGGACTAACAACATGGGGGTAT
GAAAGCTATTTCCCAATGCTTTGGATGAGTAGACTGCAGTATTGAATTAA
TGAGAATAAGTATGCCATTGTATACTCACATATACAAGCGTGCAGAGTCT
ATCTTGCAACGCTGAACTCTATGTGTTACGCACTATGTAAATGTTCTCTG
TGAAGACTTTTTGGAAAAACCAATGACCTCCTGCCCTCCTGAATTCCCTA
CCTTTCTCTTTTATTTATTTCCTAACCTGTATGTTCCCTCCTTCGTCTTC
TTCTTTTCCTCCTTCTATTTCGCTCTGTCT

Query= MSMg01no410_c07.g1 MSMg01no410_c07.g1 CHROMAT_FILE:
MSMg01no410_c07.g1 PHD_FILE: MSMg01no410_c07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:47 2005
         (399 letters)



>mm_chr5_46980380_46981178
          Length = 799

 Score =  743 bits (384), Expect = 0.0
 Identities = 396/400 (99%), Gaps = 2/400 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggaaaccttggaaactgagcaaataggatcttctttgtgagtcctaaccttttgctaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 599 aaggaaaccttggaaactgagcaaataggatcttctttgtgagtcctaacctttttctaa 540

                                                                       
Query: 61  ctcacattactctgaatgacccaaacctagcacaaggtcagcctcaaacatctaagtcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 ctcacattactctgaatgacccaaacctagcacaaggtcagcctcaaacatctaagtcaa 480

                                                                       
Query: 121 agacatattccctgcagtagacagtgtgattgggggtcagctcaggagcctaggataagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 agacatattccctgcagtagacagtgtgattgggggtcagctcaggagcctaggataagc 420

                                                                       
Query: 181 tggtgattgactgcccttcaatcctgctcagtggcacaaagaacacttcttttaggaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tggtgattgactgcccttcaatcctgctcagtggcacaaagaacacttcttttaggaatg 360

                                                                       
Query: 241 gggaagtg-ttgacagcccacctgagctgcatgctgcccctcagctgaggtattcacttt 299
           |||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 gggaag-gcatgacagcccacctgagctgcatgctgcccctcagctgaggtattcacttt 301

                                                                       
Query: 300 gtaggagccatggtatcttaaacatcacaagcatccttactagataggactaacaacatg 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 gtaggagccatggtatcttaaacatcacaagcatccttactagataggactaacaacatg 241

                                                   
Query: 360 ggggtatgaaagctatttcccaatgctttggatgagtaga 399
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 ggggtatgaaagctatttcccaatgctttggatgagtaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 799
Length adjustment: 9
Effective length of query: 390
Effective length of database: 790
Effective search space:   308100
Effective search space used:   308100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)