BAC Information

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BAC

Clone NameMSMg01-410C20
Chromosome5 (Build37)
Map Location 59,672,382 - 59,672,861
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041385, LOC100041396, LOC666499, EG625870
Downstream geneLOC100041425, LOC546866, Cbfa2t2-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-410C20.T7 (MSMg01no410_c20.b1)MSMg01-410C20.TJ (MSMg01no410_c20.g1)
ACCAG507486AG507487
length756756
length of high quality
(start - end)
586 (48 - 633)480 (76 - 555)
definitionCHROMAT_FILE: MSMg01no410_c20.b1 PHD_FILE: MSMg01no410_c20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:50 2005CHROMAT_FILE: MSMg01no410_c20.g1 PHD_FILE: MSMg01no410_c20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:50 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCACCTGATTAATACTGAATGGCAGAGAAGCAGCTGAAAAAAT
GTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACACTGATA
TTCCACTTCACTCCAGTCAGAATGGCTAAGATCAAAAACTCAGGTTACAG
CAGATGCTGGTGAGGATGTGGAGAAAGGGGAACACTCCTCCATTGTTGGT
GGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTC
AGAAAATTGGACATAGTACTACCGGAGGATCCCACAATACCTCTCCTGGG
CATATATCCAGAAGATGTCCCAACCGGTAAGAAGAACACATGCTCCACTA
TGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGA
TGCCCCTCAACAGATGAATGGATACAGAAAATGTGGTACATTTACACAAT
GGAATACTACTCAGCTATTAAAAAAAATGAATTTATGAAATTCCTAGGCA
AATGGATGTACCTGGAGGGTATCATCCTGAGTGAAGTAACCCAATCACAA
AGGAACTCGCACAATATGTACTAACTGATAAGTGGATATTAACCCAGAAA
CTTAAGATACCCTAGATATAAGATACAACTTGCCCAACCCTGAAATTCTA
GAAGAACTAATACCCAAGTGGAAACTTTATCCTTTCTTAAAAATGGGAAC
AAACAC
NACGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTAATTGTCTTTTACTTTGAAACTGA
ATGTTCTGACAGCCTGTGCCCTAACCAGATTTGCCTGGATAGATATAATC
ATTTGGTGTGCAATAAAACACTTAAATCATTTGGCTGGCAATATTCAGGT
GGCAATCGTTTGAATTGCAATACTATACTGCTTAGATATAGGGAAATATT
AATCACTGACTACAAAGAAATAAATGAACTTAAAATAAATTTTAATAAGT
ACTTGTTGAGATTCTTGGATAATGATTAAAGGACAATATGAAACTCTATG
TGTTTGAATGTTCTGAAATTCTGTATAAATAAAGATCTATTTGGGGCTAC
TTGCTTGAATGAAAGACAATATATAGTCTGAGTCCTTCATTTTGCTGTCT
CTATATCTCTGTTCTGTGTTACTGAACTCATTAGACGGGCACTTCACTAA
TTGATTCCTGCTACTGATATACATTTCCTGTCATTATGAAATTAATATAA
CATTCACTGGGTATTAACCCACCCTATTGGGCAGATTTGTTGCAGGTCAG
NGATGATGTACTATCTTGTAGTGATGTTATATAGTCAAAAAATGGGATCT
CAATTCCTAATTAAGAATCTGTAAGGGATTTCTAATCTATGCTAGTAATT
ATCAACCCTTATTGAAGGACAATTGGCATTTAAACTTTCTGCGGTAGAAA
ATTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no410_c20.g1 MSMg01no410_c20.g1 CHROMAT_FILE:
MSMg01no410_c20.g1 PHD_FILE: MSMg01no410_c20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:50 2005
         (480 letters)



>mm_chr5_59672182_59673061
          Length = 880

 Score =  890 bits (460), Expect = 0.0
 Identities = 475/480 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   taattgtcttttactttgaaactgaatgttctgacagcctgtgccctaaccagatttgcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taattgtcttttactttgaaactgaatgttctgacagcctgtgccctaaccagatttgcc 260

                                                                       
Query: 61  tggatagatataatcatttggtgtgcaataaaacacttaaatcatttggctggcaatatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggatagatataatcatttggtgtgcaataaaacacttaaatcatttggctggcaatatt 320

                                                                       
Query: 121 caggtggcaatcgtttgaattgcaatactatactgcttagatatagggaaatattaatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caggtggcaatcgtttgaattgcaatactatactgcttagatatagggaaatattaatca 380

                                                                       
Query: 181 ctgactacaaagaaataaatgaacttaaaataaattttaataagtacttgttgagattct 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcactacaaagaaataaatgaacttaaaataaattttaataagtacttgttgagattct 440

                                                                       
Query: 241 tggataatgattaaaggacaatatgaaactctatgtgtttgaatgttctgaaattctgta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggataatgattaaaggacaatatgaaactctatgtgtttgaatgttctgaaattctgta 500

                                                                       
Query: 301 taaataaagatctatttggggctacttgcttgaatgaaagacaatatatagtctgagtcc 360
           |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 501 taaataaagatctatttggggctacttgtttgaatgaaagacaacatatagtctgagtcc 560

                                                                       
Query: 361 ttcattttgctgtctctatatctctgttctgtgttactgaactcattagacgggcacttc 420
           ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttcattttgctctctttatatctctgttctgtgttactgaactcattagacgggcacttc 620

                                                                       
Query: 421 actaattgattcctgctactgatatacatttcctgtcattatgaaattaatataacattc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 actaattgattcctgctactgatatacatttcctgtcattatgaaattaatataacattc 680


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space:   408900
Effective search space used:   408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)