BAC Information

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BAC

Clone NameMSMg01-410D10
Chromosome5 (Build37)
Map Location 19,426,384 - 19,426,561
singlet/doubletsinglet
Overlap geneMagi2
Upstream gene4921504A21Rik
Downstream geneLOC100041850, Phtf2, LOC622367, Tmem60, Rsbn1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-410D10.T7 (MSMg01no410_d10.b1)MSMg01-410D10.TJ (MSMg01no410_d10.g1)
ACCAG507514AG507515
length760769
length of high quality
(start - end)
354 (149 - 502)181 (295 - 475)
definitionCHROMAT_FILE: MSMg01no410_d10.b1 PHD_FILE: MSMg01no410_d10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:53 2005CHROMAT_FILE: MSMg01no410_d10.g1 PHD_FILE: MSMg01no410_d10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTAGTAATTTACGTATATATATATATATGTATATATAACTT
CCCCACAGAATCGAAGTGCAATCCTTACTTCCCTTAAGTATGGGCTGCAC
AACCTAGCTTTGTCCAAGATTCCAGGATGGGGAAGGACTAGAGTGGATGA
GAATGTGGATAATATTGCAGTGAAGAAAGCCGACCAATGCAGCTCAGTTG
TGTAATGATCATGCATGATGTCAACAGCTGCAAGTCATGATTACCTTCAT
ACATCTGCTGTGAATTGATGAGACTGTTTATCACAATCTTGCTCCTCAGA
ACCCACAAGAAACTGCCAAACAAACCCAGTTTGAGTCATTCTATATGATA
CCTGAGTAGTAATTTTCAAAATTTTCACTATTAAAAAAGTCTGAGATTCT
TGAAGCTTGTGAACAACACCCAAACATGAAGCGATAGAATGAAGGAGGAA
TGCAAATGGTTGGATGACAGCTGTCCTGTCTACAGCTCCCCTGTGTGATA
GGCAACAGAGGAGAAATACTATCTTTATAACCACGGAGAGAATGCGATCC
TTTGTACATCATGCTAAATCTGAGTGAGTTCAGCATTCTTCTCTGAAGGC
TCATCCTTCCTTTGGAGTGCGGTCCCCCCCTTACCGTACATGCTGCTGCC
CCACGATTTAACTCTTGCTTTGATTCCCCCGCGGTCAACCTTTTTCCCTC
CCTTTCCCCC
NNNTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTAATGATCGCTGGATTT
AGCAACAGAGACATCTGGAGAATAGTGAGAGAACAGGAGACAGAGCACAG
ATAGTTCCCTTAAACTTAGTTTTTGGCTTATGCTGGAGAGAAAACAGAGT
CAACAGATGGATTTTTTTTTTTCAGTTTAGTGAGAAACGTGATCACATTC
ATGTATTACAGACCATGATGTTAAGAAGGAGGAAGCACATGGTATTGGAG
AAAGAGCTGCATTTCACTGTCTCTGTGTAGGTTTGTAATCTTTGCACTAC
CTGGGCCTATACATGGTGCTTTCCCCGTAAGTTACCTCACCGGCTTTGGT
GTCTATATTTTATTTTGAAACAGGCTCTTACTATGTTACTGAAGCTGCCC
TTGGAATTGCCGTCTCCCTACCTGGTCCCCTAAGTACCTGATATTATGGG
TGCACACCCCAATGTCCAGCCTTTGGTGGGAGGGTTTTAGATAGAGTATA
CCGTCCAGAGTACCGTCGGAGAGTCCGGCGCGACTTGGGACCATCATCTT
CATGAAGCCCGCCTGGCCCTCACGTGGACGTTCTACAAATTCGTGTTTCT
NGGTTTTCCCGGTTCTTTCCGTCTCTCCCCCTTCTTCTCCCCTTCTCTCT
CCCTTCCCCCTTTCTTTCGCCCATCTTCTCTTTCTTTTACCCTTTTCTTT
TTTTCCCCGCTCTTCTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no410_d10.g1 MSMg01no410_d10.g1 CHROMAT_FILE:
MSMg01no410_d10.g1 PHD_FILE: MSMg01no410_d10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:53 2005
         (181 letters)



>mm_chr5_19426184_19426763
          Length = 580

 Score =  284 bits (147), Expect = 2e-81
 Identities = 171/179 (95%), Gaps = 1/179 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttggagaaagagctgcatttcactgtctctgtgtaggtttgtaatctttgcactacctgg 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttggagaaagagctgc-tttcactgtctctgtgtaggtttgtaatctttgcactacctgg 259

                                                                       
Query: 61  gcctatacatggtgctttccccgtaagttacctcaccggctttggtgtctatattttatt 120
           ||||||||||||| ||||||| ||||||||||||||| |||||||| |||||||||||||
Sbjct: 260 gcctatacatggtactttcccagtaagttacctcaccagctttggtttctatattttatt 319

                                                                      
Query: 121 ttgaaacaggctcttactatgttactgaagctgcccttggaattgccgtctccctacct 179
           |||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||
Sbjct: 320 ttgaaacaggctcttactatgttaccaaagctgcccttggaattgccatctccctacct 378


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 181
Length of database: 580
Length adjustment: 8
Effective length of query: 173
Effective length of database: 572
Effective search space:    98956
Effective search space used:    98956
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)