BAC Information

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BAC

Clone NameMSMg01-410F10
Chromosome5 (Build37)
Map Location 54,151,173 - 54,151,390
singlet/doubletsinglet
Overlap genenone
Upstream genePi4k2b, Zcchc4, Anapc4, Slc34a2, 2310045A20Rik, 1810013D10Rik, LOC100041198, LOC100041911, Rbpj, Cckar
Downstream geneTbc1d19, Stim2, EG666377, LOC666380
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-410F10.T7 (MSMg01no410_f10.b1)MSMg01-410F10.TJ (MSMg01no410_f10.g1)
ACCAG507610AG507611
length744813
length of high quality
(start - end)
245 (78 - 322)218 (84 - 301)
definitionCHROMAT_FILE: MSMg01no410_f10.b1 PHD_FILE: MSMg01no410_f10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:03 2005CHROMAT_FILE: MSMg01no410_f10.g1 PHD_FILE: MSMg01no410_f10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNAAACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGATC
CGCGGAATTCCTACATTTCCGAGAGATGGTGCATGCTTTAATCCCACCAG
CTCTGGAGGCAGAGTCAGGTGTACATCTTTGAGGCCAGCTTGGTCTACAG
AGTGAGTTTCAAGCACAGAGAATCCCTAACTTGAAGAACCAAAACCAGAT
AACCAATTATCATTACATGTTGTGGCTGGAGAGATGGCTCAGATGTTAGG
AGCACTTGTTCTCCTGTGGGCACTGGACACGTTCATGGTGAATAGACATA
CACCCTTACAGGAAAAACTTTCTTTATCTTAAAATAAAAATAAATACAAA
AATAATTTTAAAAAATCCCTACATATTGATATCATGACAAGTTAATGTGG
TTAGTATCTGAAATTGCATAATGTCAACAGCTCCTATTGAAAGTGACAGA
ACACAACTCTGGCAGTGATGTTGCAGGAGACCAGCTAGTGAGCTGACAGT
TATTTGTTACTTCTTGAATAGATGCTTCCGAGATTAAGCTTTTTTATCGC
TCAGTCCGTTTTGCACTACGATGCTGGTCACCTCATTCTCACTGCCGGCT
GACGGTTCTTACTATGACCCGCTATTCCGGTCTAATTCCTTTCTTCGTTT
TTTTGCCCTGCATCTGTTTACAATCACTCTCCTCTTGCTCCATTCACATT
CTCCTATTTTTCCACCCCTCCCTCTTTTATCCTCCCTTTCCCCC
CAAAGGAACGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTTTCGTAAGGGAA
AGTGCAGGCTAGTGTCTGAGGTGCTGTGCTCAGGTTTAAGGACAGGGGAC
AGGTGCTAAGGTTCAACTCAAATGGGTTGGCCTTAACTAGGTTCTGTTGC
TGTCTAACCATCTGCCCAGGTTTCCTTTCTGTTGCTGTTCACTGGGAAGA
CAGTCCTGGGCTGTGTGCATAGGAGAGGGAGAGACGGAGGGAGGGAGGGA
GGNAGTNNNTNNNNNNNNNNNNTTTTTTTTTTTTNNTNNNNNNNNNNNNN
NNNNNNCCNNNNNNNNNTTTTTCTTCTCTCTCCTCCTTTCCCTTGCCCTC
CCTCCCTCTCTCTCTTTTCTTTTCTCCCTTCTTTCCTTTCTTTCCCTCTT
CCCTCCCCTCCTCCTTCTTTTCCCCCCTTCCTTTTTCCCCCTTTTTCCTC
TTCTTTTTCCTCCCTCTTTTCTTTCCTTTTCCTTTCCCTCTTCTCTCTTC
TTTTTCTTTTTCCCCTCCCTCTTCTCTCTCCTCTTCCCTTCTTCCCCTTC
TCCCTCCTCCTTCTTCCGTCTTCTCCCCTCTTTCCCCTCTTCCTTCTCCC
TTCTCCTCCTCTCCCCTCCGCGTTCTCTATTCCCCCCTTCCCTTCCCTTC
TCTCCTCCCGTCTTCTTCCCCTTCCCTTCTTCCTCTTCCTCCCCTTCTCT
TTCCTCCCTCCCTCCTCTTCCCTTTTTACCTCTCTTCTCTTTTTATCCTG
CTATTTTTTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no410_f10.g1 MSMg01no410_f10.g1 CHROMAT_FILE:
MSMg01no410_f10.g1 PHD_FILE: MSMg01no410_f10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:03 2005
         (218 letters)



>mm_chr5_54151000_54151617
          Length = 618

 Score =  375 bits (194), Expect = e-108
 Identities = 212/218 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttctttcgtaagggaaagtgcaggctagtgtctgaggtgctgtgctcaggtttaaggac 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 391 tttctttcgtaagggaaagtgcaggctagtgtatgaggtgctgtgctcaggtttaaggac 332

                                                                       
Query: 61  aggggacaggtgctaaggttcaactcaaatgggttggccttaactaggttctgttgctgt 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 aggggacgggtgctaaggttcaactcaaatgggttggccttaactaggttctgttgctgt 272

                                                                       
Query: 121 ctaaccatctgcccaggtttcctttctgttgctgttcactgggaagacagtcctgggctg 180
           ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 271 ctaaccatctgcccagggttcctttctgttgctgttcactgggaaaacagtcctgggctg 212

                                                 
Query: 181 tgtgcataggagagggagagacggagggagggagggag 218
           |||||||||||||||||| || ||||||||||||||||
Sbjct: 211 tgtgcataggagagggagggagggagggagggagggag 174


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 218
Length of database: 618
Length adjustment: 9
Effective length of query: 209
Effective length of database: 609
Effective search space:   127281
Effective search space used:   127281
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)