BAC Information

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BAC

Clone NameMSMg01-410F23
Chromosome5 (Build37)
Map Location 34,668,056 - 34,668,470
singlet/doubletsinglet
Overlap genenone
Upstream geneMaea, 4933407H18Rik, LOC672284, 2410018C17Rik, Slbp, Tmem129, Tacc3, Fgfr3, Letm1, LOC100040332, Whsc1, Whsc2, Gm1673, LOC100040427, Nat8l, Poln, BC023882, Mxd4, Zfyve28, EG433874
Downstream geneA830049F12Rik, LOC100040061, Rnf4, BC037112, LOC100040480, Tnip2, Sh3bp2, Add1, 0610009O03Rik, Nol14, Gprk2l, Hdh, A930005I04Rik, Rgs12, Hgfac, Dok7, Lrpap1, Adra2c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-410F23.T7 (MSMg01no410_f23.b1)MSMg01-410F23.TJ (MSMg01no410_f23.g1)
ACCAG507636AG507637
length747752
length of high quality
(start - end)		524 (52 - 575)443 (83 - 525)
definitionCHROMAT_FILE: MSMg01no410_f23.b1 PHD_FILE: MSMg01no410_f23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:05 2005CHROMAT_FILE: MSMg01no410_f23.g1 PHD_FILE: MSMg01no410_f23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAGGCAGGTATCCGAATGATATTGAGAATTTTGCTTAGTT
TGACTAGTTATTTCATGATGCTGTTATTTAGGTAGGACAACCTCTTTTTT
CCTTTCTTTTAGAAAATATACACTACAGGGGCCTAAAAGATGACTCAGTG
GTCAAGAGCACTGGTTTTTCTTCCAGAGGACTTGGGGTTCAATTTCCAGC
ACCCACATGTCAGCTCATTACTGTCTAACTCCTGTTCAAGGGGATCAATC
CCACACCCTCACACAGACACACCCACAGTTTTAACACCAATGCACACAAA
ATAGAAATAAGTTAAAAGAAAAGAAAATACACATTACTGTCTCTATACTT
AGTATAGAAAATACACTAAGAAGTATAGTATATTGTACTAGTAACCATTT
CTATGGTAACTGTTTCTATGGTAACCATTTCTAGGTACCTATTTCTAAAT
GACTTTGAAGCCTAAGAAACAGCTAGCTAACCAATGAAGTACATACAGCA
CAAAGGTGGTGCTTGCAACATTGATGCATTAGATAAGTTGTGTGTCATGG
ACATGAAAGTCATTGCCACAGAACTGATAAATCTCCCATAAAATGAAAAT
GGTATAGGTAAAGGATTGTCCGCCAAGGGCTGCGGGTTGTGGGCATGGTA
CCCCCCCAAGGAAATTGGGTAACACGTTTGGTTTTCCCTGGTTCCTT

NTTTTAACAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGAAGCTAACCTCCAAA
AAACTCAACAACCCAATCCCAAAAAAAAAAAAAATGGGGTATAGAGCTAA
ACAGAGAATTTACAACAGAGGAATCTCGAATGGCAGAGAACCACTTAAAG
AAATGTTCTAAATCCTTAGTCATCGGGGAAATGAAAACCAAAACAACCTG
AGATTCCACCTTACAACTATCAGAATGGCTAAGATCAAACATTTAGGTGA
CAGCATATGTCGGTGAGGATGTCGGTAAAGAGGAACACTCCTCCACTGCT
GGTGAGATTGCAAACTGGTACAACCACTCTAGAAATCAATCTGGAAGTTC
CTCAGAAAATTGGAAATAGATCTACAAGAAAACCTAGCTATACCACTCTT
GGGTATATACCCAAAAGATACCCCACTATGGCACAGGGGCATGTGTTCCA
CTATGTTCCTAGTGGCCTTATCTGTGATAGCCAGAAGCTGGAAACAACCC
AGATGCCCCAATGGAAGAATGGATACAGAAAATGGGGGTCATTTACCCTA
TTCCGCTATTAGGTATGAGGACCTCCCTGATTTTGGAGGCAAAAGGATAG
AACTATAAATAATCCCCCCGAAAGGTTTAATTCTAACCCAAAAGGAATTG
TGGGGATGGTGCTCCAAATAAAGGGGTATTATCCCAAAAGGTCCTTATAC
CC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no410_f23.b1 MSMg01no410_f23.b1 CHROMAT_FILE:
MSMg01no410_f23.b1 PHD_FILE: MSMg01no410_f23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:05 2005
         (524 letters)



>mm_chr5_34667547_34668470
          Length = 924

 Score =  772 bits (399), Expect = 0.0
 Identities = 411/419 (98%), Gaps = 8/419 (1%)
 Strand = Plus / Minus

                                                                       
Query: 110 agaaaatatacactacaggggcctaaaagatgactcagtggtcaagagcactggtttttc 169
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 924 agaaaatatacactacaggggcctaaaagatgactcagtggtcaagagcactggtttttc 865

                                                                       
Query: 170 ttccagaggacttggggttcaatttccagcacccacatgtcagctcattactgtctaact 229
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 ttccagaggacttggggttcaatttccagcacccacatgtcagctcattactgtctaact 805

                                                                       
Query: 230 cctgttcaaggggatcaatcccacaccctcacacagacacacccac----agttttaaca 285
           ||||||||||||||||||||||||||||||||||||||||||||||    ||    ||||
Sbjct: 804 cctgttcaaggggatcaatcccacaccctcacacagacacacccacagggag----aaca 749

                                                                       
Query: 286 ccaatgcacacaaaatagaaataagttaaaagaaaagaaaatacacattactgtctctat 345
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 ccaatgcacacaaaatagaaataagttaaaagaaaagaaaatacacattactgtctctat 689

                                                                       
Query: 346 acttagtatagaaaatacactaagaagtatagtatattgtactagtaaccatttctatgg 405
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 acttagtatagaaaatacactaagaagtatagtatattgtactagtaaccatttctatgg 629

                                                                       
Query: 406 taactgtttctatggtaaccatttctaggtacctatttctaaatgactttgaagcctaag 465
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 taactgtttctatggtaaccatttctaggtacctatttctaaatgactttgaagcctaag 569

                                                                      
Query: 466 aaacagctagctaaccaatgaagtacatacagcacaaaggtggtgcttgcaacattgat 524
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 aaacagctagctaaccaatgaagtacatacagcacaaaggtggtgcttgcaacattgat 510


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space:   469796
Effective search space used:   469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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