BAC Information

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BAC

Clone NameMSMg01-410G23
Chromosome5 (Build37)
Map Location 107,006,853 - 107,137,157
singlet/doubletdoublet
Overlap geneLOC100042389, Zfp644, LOC100042400
Upstream geneLrrc8c, Lrrc8d, LOC100042335, D830014E11Rik, LOC100042349, Zfp326, LOC626723, LOC546882, LOC671295, 4930458A03Rik, Barhl2, EG666892
Downstream geneEG666922, Hfm1, Cdc7, Tgfbr3, LOC666518, Brdt, LOC666535, Abhd7, 4921521K07Rik, LOC72342, 1700028K03Rik, Glmn, AW060207
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-410G23.T7 (MSMg01no410_g23.b1)MSMg01-410G23.TJ (MSMg01no410_g23.g1)
ACCAG507684AG507685
length773774
length of high quality
(start - end)		496 (51 - 546)414 (80 - 493)
definitionCHROMAT_FILE: MSMg01no410_g23.b1 PHD_FILE: MSMg01no410_g23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:10 2005CHROMAT_FILE: MSMg01no410_g23.g1 PHD_FILE: MSMg01no410_g23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,136,674 - 107,137,157)(107,006,853 - 107,007,266)
sequence
NNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATC
CGCGGAATTCACTTTGCATTTACGCAGGCCTGCTCCAGCCACGTCACTAA
CCTCACAGCAGAATGATTTCATACTTTCTGAAATTGAATTCCTGGAGCCC
TTTTTATTTTTCAAGTACTGTGGGACTGAGTGTCACATGAGGAGAGTAAA
TGTAACGAGAAGCACAGAATGCAGTGTGAGGCCGAGGAAAGCCTCTCTGA
GGGAGGGATGTTCTGTTGAAATGGTGGGCCCTAATGCTTCATATGCAAGC
ATTTATAGAATAGTGTATGAAAAGAAATGCTCATAATAAGGGCCCAGCTC
TGGCTTGGGCCATGAGCTGAGGCTGTGCAGGTTCCTGGCAAACAGTGATG
GTACTGTTCTAGTGATGCAGGGGAGTTCCAGGGAAGGGTCACAGTGGCTA
TTGTATAGTGCCTGCAGGGGTGGGATAAGATAATTAACAGGACCTGTTTC
TATTGTGTCTTAAGAGACTGAGAGGGGAGCGGTGGTGGCATAAGCCTTTT
ATCCCAGCACTTGGGAGGCAGAGGCAGGCATATTTCTGAATTCGAGGCCA
GCCTGGTCTACAAAGTGATTTCTTGGAAGCCTGGGGCTACTCTGAGAAAA
CCCGTCTTTAACAAAATTACTCTTTCTCCTACCCCTTTCTCTCCATACGC
TCTTCCCTCCTGATCCCCCCCCCCGTTGATCTTCCCTCCTTTCCTTAAGT
TTGGTTTTCGGTTTTCCTCCTCN

NNNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTCAGCCCCCACATAATCA
CATTTGGTGCAGGAATAAAGGAGCTAAAACATGAAGCATTTTATTAAAAA
AACATAAATTCTTTTTAATTAATGCTATGAGGGTTCTGGTGAATTCCAAG
CTTCGAAAGCGCTGGAAGACATGACTGGCTCAACTAATTACTAGCAAATT
TGCTCTCGTTATAACTCCTTTAAAAAAAAGAGAGAGAGAGAAAGAAAAAC
CTCATAATATGATTTTGGGGTGTTAGAATATATTGGGGGGCCAAGCTCTT
CTTCTTCCAGTTATATAGTTAGTTGAACACTAGCTTTGCTGAGAGAACGA
ACACAAGTGAGTGTCAGCTCCCAAATGGTTCAACCTAAGACTGCATCGAG
GGGCTCTATACTTTAATGCTTGANAGACGTTAATAAGAGTGGAAAATTAA
AAATCATAATATTGGAACAAATTCTAAATGTTTATCTTTGGAACTCCTAA
AGTTTGATGTATGAAAGCCAGCCCGTGGGAGAAGACCTTCCCACTGGAAA
AGCCACAATGGTTTTGGAAACACCCTCACGGGTTGAATCCTGGGTAGAAT
GGCCCCCCTGTTGCGCTTTAAAACCCCTCCCCGGGGAATAAAGAAAAGGC
ACAAATCCTCCGGAGACTTCTGAGGTCCTTCCGATTTTGGGTGTTCTTCT
CCGGAATTTTTTTTCGTGCCATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no410_g23.b1 MSMg01no410_g23.b1 CHROMAT_FILE:
MSMg01no410_g23.b1 PHD_FILE: MSMg01no410_g23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:10 2005
         (496 letters)



>mm_chr5_107136470_107137365
          Length = 896

 Score =  890 bits (460), Expect = 0.0
 Identities = 478/484 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactttgcatttacgcaggcctgctccagccacgtcactaacctcacagcagaat 64
           ||||||||||||||  || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 gaattcactttgcagctatgcaggcctgctccagccacgtcactaacctcacagcagaat 629

                                                                       
Query: 65  gatttcatactttctgaaattgaattcctggagccctttttatttttcaagtactgtggg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 gatttcatactttctgaaattgaattcctggagccctttttatttttcaagtactgtggg 569

                                                                       
Query: 125 actgagtgtcacatgaggagagtaaatgtaacgagaagcacagaatgcagtgtgaggccg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 actgagtgtcacatgaggagagtaaatgtaacgagaagcacagaatgcagtgtgaggccg 509

                                                                       
Query: 185 aggaaagcctctctgagggagggatgttctgttgaaatggtgggccctaatgcttcatat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 aggaaagcctctctgagggagggatgttctgttgaaatggtgggccctaatgcttcatat 449

                                                                       
Query: 245 gcaagcatttatagaatagtgtatgaaaagaaatgctcataataagggcccagctctggc 304
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 448 gcaagcatttatagaatagtgtatgaaaagaaatgctcagaataagggcccagctctggc 389

                                                                       
Query: 305 ttgggccatgagctgaggctgtgcaggttcctggcaaacagtgatggtactgttctagtg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ttgggccatgagctgaggctgtgcaggttcctggcaaacagtgatggtactgttctagtg 329

                                                                       
Query: 365 atgcaggggagttccagggaagggtcacagtggctattgtatagtgcctgcaggggtggg 424
           ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct: 328 atgcaggggagttccagcgaagggtcacagtggctactgtatagtgcctgcaggggtggg 269

                                                                       
Query: 425 ataagataattaacaggacctgtttctattgtgtcttaagagactgagaggggagcggtg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ataagataattaacaggacctgtttctattgtgtcttaagagactgagaggggagcggtg 209

               
Query: 485 gtgg 488
           ||||
Sbjct: 208 gtgg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space:   430596
Effective search space used:   430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no410_g23.g1 MSMg01no410_g23.g1 CHROMAT_FILE:
MSMg01no410_g23.g1 PHD_FILE: MSMg01no410_g23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:10 2005
         (414 letters)



>mm_chr5_107006653_107007466
          Length = 814

 Score =  795 bits (411), Expect = 0.0
 Identities = 413/414 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccttcagcccccacataatcacatttggtgcaggaataaaggagctaaaacatgaagcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccttcagcccccacataatcacatttggtgcaggaataaaggagctaaaacatgaagcat 260

                                                                       
Query: 61  tttattaaaaaaacataaattctttttaattaatgctatgagggttctggtgaattccaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttattaaaaaaacataaattctttttaattaatgctatgagggttctggtgaattccaa 320

                                                                       
Query: 121 gcttcgaaagcgctggaagacatgactggctcaactaattactagcaaatttgctctcgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcttcgaaagcgctggaagacatgactggctcaactaattactagcaaatttgctctcgt 380

                                                                       
Query: 181 tataactcctttaaaaaaaagagagagagagaaagaaaaacctcataatatgattttggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tataactcctttaaaaaaaagagagagagagaaagaaaaacctcataatatgattttggg 440

                                                                       
Query: 241 gtgttagaatatattggggggccaagctcttcttcttccagttatatagttagttgaaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgttagaatatattggggggccaagctcttcttcttccagttatatagttagttgaaca 500

                                                                       
Query: 301 ctagctttgctgagagaacgaacacaagtgagtgtcagctcccaaatggttcaacctaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctagctttgctgagagaacgaacacaagtgagtgtcagctcccaaatggttcaacctaag 560

                                                                 
Query: 361 actgcatcgaggggctctatactttaatgcttganagacgttaataagagtgga 414
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 561 actgcatcgaggggctctatactttaatgcttgaaagacgttaataagagtgga 614


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 814
Length adjustment: 9
Effective length of query: 405
Effective length of database: 805
Effective search space:   326025
Effective search space used:   326025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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