BAC Information

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BAC

Clone NameMSMg01-411L01
Chromosome5 (Build37)
Map Location 27,234,941 - 27,235,496
singlet/doubletsinglet
Overlap geneDpp6
Upstream geneLOC100038949, EG272714, EG545739, Speer4a, EG664804, LOC619645, LOC100039045, 5031410I06Rik, LOC434689, LOC664837, 4930584F24Rik
Downstream geneB930011P16Rik, Speer4b, Paxip1, Htr5a, EG433862
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-411L01.T7 (MSMg01no411_l01.b1)MSMg01-411L01.TJ (MSMg01no411_l01.g1)
ACCAG508641AG508642
length760709
length of high quality
(start - end)
560 (48 - 607)305 (57 - 361)
definitionCHROMAT_FILE: MSMg01no411_l01.b1 PHD_FILE: MSMg01no411_l01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:49 2005CHROMAT_FILE: MSMg01no411_l01.g1 PHD_FILE: MSMg01no411_l01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTATGGTCTCCTAGGGAGGATGCTCAGAAATCCAGACCTTCTG
AGCCATATATCCTTGGGCCCATTTCAGAAGTGCACTGTTTTCAAACGCTA
ATCAAGCCTGTGTTATTAGCCAGGCTGAGGTGTTTCATGTCACTGAGAAG
CGAGAGTCAATGGCCAAGTCGCTACTAAGTTCCCTGGGGCAGCAGAGCCC
TGTATCAACACAGGCTGGACCCTGCAACTCATCTCCCAGGCAGCGAGGCT
GTTTCCAGGAGGGCTTCACAGCAGGGCATGGCACCTCACAATTACTCATA
ACTAAAAGCCTCAAAGGCTCTCTGCTCATTACACCCACATATGGACTGAG
ACTGGAGTCTGTTAGCCTGAAAGAAAGAAAACCAGACTTTGGACAGTTAC
CATCCAGGGGCATTAGAGTGTCACCAGAACACACAGTCAGTGACCAAAGA
TGCAAATGGAATTTCAGAAGCCACAAGAAAAATTTAAGTTTTTGATGTGT
CAAAAATTTCCAGGTCACAAGTTTCTTTAAAGCTATTGCTGATTTCCCAG
GAGCTTTCCAAGGCTCCAGGTGTCTTGCAGATCTATCCTCTGCTCTCCTT
CCTATCATACTTGAGGATCCCCAGAGGCAGGTTCCTGAAGACCCGAAGCC
ATCTCTAGACTTAGATTTGAACCACCTTTTACCAGCAACTTCGGGGTCGG
AAAAATTACN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT
TTCTGCATAGGGCTCCCAATGGAGGAGCTAGAGAAAGTAGCCAAGGAGCT
AAAGGGATCTGCAACCCTATAGGTGGAACAACATTATGAGCTAACCAGTA
CCCCGGAGCTCTTGACTCTAGCTGCATATATATCAAAAGATGGCCTAGTC
GGCCATCACTGGAAAGAGAGGCCCATTGGACTTGCAAACTTTATATGCCC
CAGTACAGGGGAATACCAGGGCCAAAAAGGGGGAGTGGGTGGGCAGGGGA
GTGGGGGTGTNNNNNNNNNNNNNNTNNNNNTNTNTNNNTNTTGTNNTTGT
NNNTTTTTTNTNTTTTTTTTTTTTTTTTTTNNTTTTTTTTTTTTTTGGNN
TNTTTTTTTNNTTTTTTTTTTTTTTTTTTTTTTTNNNNNTTTTTTTTTNT
TTTTTTTTTTTTTTTTNTTTTTTTTNTTTTTTTNNTTTTTTTTTTTTTTN
TTNNTTTTTTTTTTTTTNNTTTTTTTTTTTTTTTTTTTTTTTTTGTTTTT
TTGTGGTTTGTTGTGGTTTTGTTGTGTGTTTCGTGTGGTTGCGTTGTGTT
TTTTTGTTTTTGTTGTTGTNTTGTTGTGTTTTGGGCTGTGTGGTTGTTTG
CTNTTGGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no411_l01.b1 MSMg01no411_l01.b1 CHROMAT_FILE:
MSMg01no411_l01.b1 PHD_FILE: MSMg01no411_l01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:49 2005
         (560 letters)



>mm_chr5_27234737_27235696
          Length = 960

 Score = 1029 bits (532), Expect = 0.0
 Identities = 550/556 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttatggtctcctagggaggatgctcagaaatccagaccttctgagccatatatc 64
           |||||||||||| |  |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 760 gaattcttatgggcaactagggaggatgctcagaaacccagaccttctgagccatatatc 701

                                                                       
Query: 65  cttgggcccatttcagaagtgcactgttttcaaacgctaatcaagcctgtgttattagcc 124
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 cttggacccatttcagaagtgcactgttttcaaacgctaatcaagcctgtgttattagcc 641

                                                                       
Query: 125 aggctgaggtgtttcatgtcactgagaagcgagagtcaatggccaagtcgctactaagtt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 aggctgaggtgtttcatgtcactgagaagcgagagtcaatggccaagtcgctactaagtt 581

                                                                       
Query: 185 ccctggggcagcagagccctgtatcaacacaggctggaccctgcaactcatctcccaggc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 ccctggggcagcagagccctgtatcaacacaggctggaccctgcaactcatctcccaggc 521

                                                                       
Query: 245 agcgaggctgtttccaggagggcttcacagcagggcatggcacctcacaattactcataa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 agcgaggctgtttccaggagggcttcacagcagggcatggcacctcacaattactcataa 461

                                                                       
Query: 305 ctaaaagcctcaaaggctctctgctcattacacccacatatggactgagactggagtctg 364
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 460 ctaaaagcctcaaaggctctctgctcattacacccacatatggactgagactggagtccg 401

                                                                       
Query: 365 ttagcctgaaagaaagaaaaccagactttggacagttaccatccaggggcattagagtgt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ttagcctgaaagaaagaaaaccagactttggacagttaccatccaggggcattagagtgt 341

                                                                       
Query: 425 caccagaacacacagtcagtgaccaaagatgcaaatggaatttcagaagccacaagaaaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 caccagaacacacagtcagtgaccaaagatgcaaatggaatttcagaagccacaagaaaa 281

                                                                       
Query: 485 atttaagtttttgatgtgtcaaaaatttccaggtcacaagtttctttaaagctattgctg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 atttaagtttttgatgtgtcaaaaatttccaggtcacaagtttctttaaagctattgctg 221

                           
Query: 545 atttcccaggagcttt 560
           ||||||||||||||||
Sbjct: 220 atttcccaggagcttt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space:   522500
Effective search space used:   522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)