BAC Information

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BAC

Clone NameMSMg01-411M24
Chromosome5 (Build37)
Map Location 125,401,274 - 125,558,631
singlet/doubletdoublet
Overlap gene3110032G18Rik, Ncor2
Upstream geneCcdc62, Hip1r, Vps37b, Abcb9, Ogfod2, Arl6ip4, Pitpnm2, Mphosph9, 2810006K23Rik, Cdk2ap1, Sbno1, Setd8, BC003324, LOC606492, 6330548G22Rik, 2900002H16Rik, Rpl32-ps5c, Tmed2, Ddx55, Eif2b1, Gtf2h3, 4432405B04Rik, Atp6v0a2, Atp6v0a2, Dnahc10, Ccdc92, Zfp664
Downstream geneScarb1, Ubc, Dhx37, Bri3bp, Aacs, Tmem132b, EG231736, LOC100039178, LOC665760
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-411M24.T7 (MSMg01no411_m24.b1)MSMg01-411M24.TJ (MSMg01no411_m24.g1)
ACCAG508735AG508736
length788791
length of high quality
(start - end)
483 (44 - 526)476 (71 - 546)
definitionCHROMAT_FILE: MSMg01no411_m24.b1 PHD_FILE: MSMg01no411_m24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:59 2005CHROMAT_FILE: MSMg01no411_m24.g1 PHD_FILE: MSMg01no411_m24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,558,232 - 125,558,631)(125,401,274 - 125,401,765)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGGGGTGTGTCCTTTGGGAGGTGGGGAGAGATTATGTGTTGTTCACT
TTCTCTCTGAATTGAGTTGAAGCATCATGGCCAGGGACTGCTGTCCCACA
GAACAGGCGTTTTCTGGCCCACTTACGCAAAGTGCAGATCGGGAGGTCAA
GTCTGCAGAGACAGGCGAGGCACCCCAGTAACAATGCCCTGAAAGTTAGT
AAAGTGCCTGCTATGTGAGCAAGAGAACCTGAATTCCATCCCTAGAGCCA
CACACTCGTAATCCCAGGGGAAGAGAGGTGGAGACAGGACACTCTGTCTT
GCTGGCCAGTCAGCCTGTTAATCGACAAGCTGTAGCCCCTAGAGAGACTC
AGTCTCCAAATACAAGGTGAACGGCTCCTGAAGAGCAAAACCTGAGGCTG
ACCTCTGGCCCTCCGTACACACGTGCATACAGGCACAGATACACACGCAT
GTGCGCATGCCCTGGGAAATACCCAGGACCCAGTCTGTGTCCACTCTGGA
CTTGAAAGATGGCTGGATTTGGTCCGGGGCTGTGGCTTTCTAGCTCATTT
TATGTGCCCACAGGGACTTGGTTAGTTTCTGGGTCTTGCACATGTGTGAC
TCCCCCCGGTTTCGTCCATAACTTCTGATTTTTTTAACTCCTCCTTTGTG
TATTCATTTATTTTTTTTCTCATCTCCACCCCTTTCCCCTCTTTTCTCCC
TCTCTTCCCACCTCCTTTTTCCTTTCTTTTCTTCTCCC
TGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACAGGCTAAGGAGAGATGGCTCAGTGGGTA
AAGTGCTCCTTCTGTAAGCCTGAGGGCCTGAGTCCCGATTCCCCAGCACC
TATGTAAGAAGCCAGACACAGTGTTGTGTGCCTGGAATCCCAGCCTTGGG
GAGGCAGAGACAGATGGATCCCTGGGGCTTGCGGTCAGACAACCAGTATA
GCTGAAACAGTGAGCTCCCACTCAGAGAGAGAGAGAAAGGGAGAGAGAGA
GAGTGTAATGTGGAGGTGATAGTAGAAGATACCTCAAGCCACCATCTGTC
CTTTGTGTACATACACAAGCATGCTCACAGAGAAAATTATAAAACCAGCC
GTGGATTAGGGCTGAATATCAGTGTCACTGTAGTAGTCTGTCATGCATGA
GGTGTGGGTTTGATTCCAGCAACACACATACACACACACACACATACACA
CACATACACACACACATACACACAGACATATACACACACATACATGCATA
CACACACATACACACACCAACACACATACTCACATATGTACACACATTAA
CCTACCCCCTTATACACCTACTTACACCCATATACACACATATCCCTTCA
CCTACACCCCCTAACCAACTCCCTTTTATCCCCTGGTATTTTGTAACAAT
TTTCTCCCCCCCGACTCCTCAAAATTAAAATTGTTGGGGTAGGGTTCTTC
CCCCGGTTCCTGGCCAAAAAAAAAAACAAAAATTTTTTGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no411_m24.b1 MSMg01no411_m24.b1 CHROMAT_FILE:
MSMg01no411_m24.b1 PHD_FILE: MSMg01no411_m24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:59 2005
         (483 letters)



>mm_chr5_125558232_125559114
          Length = 883

 Score =  766 bits (396), Expect = 0.0
 Identities = 399/400 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaggggtgtgtcctttgggaggtggggagagattatgtgttgttcactttctct 63
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ggaattcaggggtgtggcctttgggaggtggggagagattatgtgttgttcactttctct 341

                                                                       
Query: 64  ctgaattgagttgaagcatcatggccagggactgctgtcccacagaacaggcgttttctg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 ctgaattgagttgaagcatcatggccagggactgctgtcccacagaacaggcgttttctg 281

                                                                       
Query: 124 gcccacttacgcaaagtgcagatcgggaggtcaagtctgcagagacaggcgaggcacccc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 gcccacttacgcaaagtgcagatcgggaggtcaagtctgcagagacaggcgaggcacccc 221

                                                                       
Query: 184 agtaacaatgccctgaaagttagtaaagtgcctgctatgtgagcaagagaacctgaattc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 agtaacaatgccctgaaagttagtaaagtgcctgctatgtgagcaagagaacctgaattc 161

                                                                       
Query: 244 catccctagagccacacactcgtaatcccaggggaagagaggtggagacaggacactctg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 catccctagagccacacactcgtaatcccaggggaagagaggtggagacaggacactctg 101

                                                                       
Query: 304 tcttgctggccagtcagcctgttaatcgacaagctgtagcccctagagagactcagtctc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 tcttgctggccagtcagcctgttaatcgacaagctgtagcccctagagagactcagtctc 41

                                                   
Query: 364 caaatacaaggtgaacggctcctgaagagcaaaacctgag 403
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 40  caaatacaaggtgaacggctcctgaagagcaaaacctgag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space:   412929
Effective search space used:   412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no411_m24.g1 MSMg01no411_m24.g1 CHROMAT_FILE:
MSMg01no411_m24.g1 PHD_FILE: MSMg01no411_m24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:59 2005
         (476 letters)



>mm_chr5_125401080_125401955
          Length = 876

 Score =  835 bits (432), Expect = 0.0
 Identities = 471/492 (95%), Gaps = 16/492 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaggctaaggagagatggctcagtgggtaaagtgctccttctgtaagcctgagggcctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 acaggctaaggagagatggctcagtgggtaaagtgctccttctgtaagcctgagggcctg 254

                                                                       
Query: 61  agtcccgattccccagcacctatgtaagaagccagacacagtgttgtgtgcctggaatcc 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 agtcctgattccccagcacctatgtaagaagccagacacagtgttgtgtgcctggaatcc 314

                                                                       
Query: 121 cagccttggggaggcagagacagatggatccctggggcttgcggtcagacaaccagtata 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cagccctggggaggcagagacagatggatccctggggcttgcggtcagacaaccagtata 374

                                                                       
Query: 181 gctgaaacagtgagctcccactcagagagagagaga--aagggagagagagagag----t 234
           ||||||||||||||||||| ||||||||||||||||  |||||||||||||||||    |
Sbjct: 375 gctgaaacagtgagctcccgctcagagagagagagagaaagggagagagagagagagagt 434

                                                                       
Query: 235 gtaatgtggaggtgatagtagaagatacctcaagccaccatctgtcctttgtgtacatac 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gtaatgtggaggtgatagtagaagatacctcaagccaccatctgtcctttgtgtacatac 494

                                                                       
Query: 295 acaagcatgctcacagagaaaattataaaaccagccgtggattagggctgaatatcagtg 354
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 495 acaagcatgctcacagagaaaattataaaaccagctgtggattagggctgaatatcagtg 554

                                                                       
Query: 355 tcactgtagtagtctgtcatgcatgaggtgtgggtttgattccagcaacacacatacaca 414
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tcactatagtagtctgtcatgcatgaggtgtgggtttgattccagcaacacacatacaca 614

                                                                       
Query: 415 cacacacaca--------tacacacacatacacacacaca--tacacacagacatataca 464
           ||||||||||        ||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 615 cacacacacacacacacatacacacacatacacacacacacatacacacagacatataca 674

                       
Query: 465 cacacatacatg 476
           ||||||||||||
Sbjct: 675 cacacatacatg 686


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 68
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space:   403556
Effective search space used:   403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)