Query= MSMg01no411_m24.b1 MSMg01no411_m24.b1 CHROMAT_FILE:
MSMg01no411_m24.b1 PHD_FILE: MSMg01no411_m24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:59 2005
(483 letters)
>mm_chr5_125558232_125559114
Length = 883
Score = 766 bits (396), Expect = 0.0
Identities = 399/400 (99%)
Strand = Plus / Minus
Query: 4 ggaattcaggggtgtgtcctttgggaggtggggagagattatgtgttgttcactttctct 63
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ggaattcaggggtgtggcctttgggaggtggggagagattatgtgttgttcactttctct 341
Query: 64 ctgaattgagttgaagcatcatggccagggactgctgtcccacagaacaggcgttttctg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 ctgaattgagttgaagcatcatggccagggactgctgtcccacagaacaggcgttttctg 281
Query: 124 gcccacttacgcaaagtgcagatcgggaggtcaagtctgcagagacaggcgaggcacccc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 gcccacttacgcaaagtgcagatcgggaggtcaagtctgcagagacaggcgaggcacccc 221
Query: 184 agtaacaatgccctgaaagttagtaaagtgcctgctatgtgagcaagagaacctgaattc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 agtaacaatgccctgaaagttagtaaagtgcctgctatgtgagcaagagaacctgaattc 161
Query: 244 catccctagagccacacactcgtaatcccaggggaagagaggtggagacaggacactctg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 catccctagagccacacactcgtaatcccaggggaagagaggtggagacaggacactctg 101
Query: 304 tcttgctggccagtcagcctgttaatcgacaagctgtagcccctagagagactcagtctc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 tcttgctggccagtcagcctgttaatcgacaagctgtagcccctagagagactcagtctc 41
Query: 364 caaatacaaggtgaacggctcctgaagagcaaaacctgag 403
||||||||||||||||||||||||||||||||||||||||
Sbjct: 40 caaatacaaggtgaacggctcctgaagagcaaaacctgag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space: 412929
Effective search space used: 412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no411_m24.g1 MSMg01no411_m24.g1 CHROMAT_FILE:
MSMg01no411_m24.g1 PHD_FILE: MSMg01no411_m24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:59 2005
(476 letters)
>mm_chr5_125401080_125401955
Length = 876
Score = 835 bits (432), Expect = 0.0
Identities = 471/492 (95%), Gaps = 16/492 (3%)
Strand = Plus / Plus
Query: 1 acaggctaaggagagatggctcagtgggtaaagtgctccttctgtaagcctgagggcctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 acaggctaaggagagatggctcagtgggtaaagtgctccttctgtaagcctgagggcctg 254
Query: 61 agtcccgattccccagcacctatgtaagaagccagacacagtgttgtgtgcctggaatcc 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 agtcctgattccccagcacctatgtaagaagccagacacagtgttgtgtgcctggaatcc 314
Query: 121 cagccttggggaggcagagacagatggatccctggggcttgcggtcagacaaccagtata 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cagccctggggaggcagagacagatggatccctggggcttgcggtcagacaaccagtata 374
Query: 181 gctgaaacagtgagctcccactcagagagagagaga--aagggagagagagagag----t 234
||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
Sbjct: 375 gctgaaacagtgagctcccgctcagagagagagagagaaagggagagagagagagagagt 434
Query: 235 gtaatgtggaggtgatagtagaagatacctcaagccaccatctgtcctttgtgtacatac 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gtaatgtggaggtgatagtagaagatacctcaagccaccatctgtcctttgtgtacatac 494
Query: 295 acaagcatgctcacagagaaaattataaaaccagccgtggattagggctgaatatcagtg 354
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 495 acaagcatgctcacagagaaaattataaaaccagctgtggattagggctgaatatcagtg 554
Query: 355 tcactgtagtagtctgtcatgcatgaggtgtgggtttgattccagcaacacacatacaca 414
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tcactatagtagtctgtcatgcatgaggtgtgggtttgattccagcaacacacatacaca 614
Query: 415 cacacacaca--------tacacacacatacacacacaca--tacacacagacatataca 464
|||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 615 cacacacacacacacacatacacacacatacacacacacacatacacacagacatataca 674
Query: 465 cacacatacatg 476
||||||||||||
Sbjct: 675 cacacatacatg 686
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 68
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space: 403556
Effective search space used: 403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|