Query= MSMg01no411_p09.b1 MSMg01no411_p09.b1 CHROMAT_FILE:
MSMg01no411_p09.b1 PHD_FILE: MSMg01no411_p09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:10 2005
(511 letters)
>mm_chr5_106511268_106512178
Length = 911
Score = 899 bits (465), Expect = 0.0
Identities = 484/495 (97%), Gaps = 10/495 (2%)
Strand = Plus / Minus
Query: 19 aggaggcctccgtccctgctgcttcaggataagtggtgtgactgcttgtgagtgaaggtc 78
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 910 aggaggcctccgtccctgctgcttcaggataagtggtgtgactgcttgtgagtgaaggtc 851
Query: 79 tgcactctcagaccctcccaccgtgcttatgaagcaggcctacgagctc--tgcacaggt 136
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 850 tgcactctcagaccctcccaccgtgcttatgaagcaggcctacgagctccgtg--caggt 793
Query: 137 ggctggttagatgtcctaggattcaccttgcctgggtggctagttagatgtcttaggatt 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 ggctggttagatgtcctaggattcaccttgcctgggtggctagttagatgtcttaggatt 733
Query: 197 taccttaccaacccaattatttggtgagacactcaaacagatgtgggtggtctcagattc 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 taccttaccaacccaattatttggtgagacactcaaacagatgtgggtggtctcagattc 673
Query: 257 cagtctctttctccgatttaccttcccgagttaatctgtgcttgcctgtactgaccaagg 316
||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 cag------tctccgaattaccttcccgagttaatctgtgcttgcctgtactgaccaagg 619
Query: 317 aactgtaattgctgaagatactctgcctcttacgtgacacttactgggcctgtttcctat 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 aactgtaattgctgaagatactctgcctcttacgtgacacttactgggcctgtttcctat 559
Query: 377 cggttagaacacgaagtgactcaaagcacaaactttcagtagtagggcctgtctgtaagc 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 cggttagaacacgaagtgactcaaagcacaaactttcagtagtagggcctgtctgtaagc 499
Query: 437 taaataattcccattcatttgagaatcatactttgttagtgcaagtttaaaagtggcagg 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 taaataattcccattcatttgagaatcatactttgttagtgcaagtttaaaagtggcagg 439
Query: 497 tttttctctaaccca 511
|||||||||||||||
Sbjct: 438 tttttctctaaccca 424
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space: 451401
Effective search space used: 451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no411_p09.g1 MSMg01no411_p09.g1 CHROMAT_FILE:
MSMg01no411_p09.g1 PHD_FILE: MSMg01no411_p09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:11 2005
(500 letters)
>mm_chr5_106276495_106277395
Length = 901
Score = 932 bits (482), Expect = 0.0
Identities = 495/501 (98%), Gaps = 5/501 (0%)
Strand = Plus / Plus
Query: 1 ctgatac-tacaccctctcagttgctggggttataggcctgtaccaccatgcctgctcca 59
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgatacatacaccctctcagttgctggggttataggcctgtaccaccatgcctgctcca 260
Query: 60 aatctataacttctgctggagtcttccattctgtgggccaaatgggaatgggaaaagacc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatctataacttctgctggagtcttccattctgtgggccaaatgggaatgggaaaagacc 320
Query: 120 aaagtaagcacagctttctgaccaagagaaggtaatcttcgtagtaaagagaaggcctca 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagtaagcacagctttctgaccaagagaaggtaatcttcgtagtaaagagaaggcctca 380
Query: 180 gctgtcgctcggcagaggcaaggccacggaaaccatggtggaaacggcagcaactcagca 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctgtcgctcggcagaggcaaggccacggaaaccatggtggaaacggcagcaactcagca 440
Query: 240 agactatttgctaataatttattttcgttaagaaaagaaaacatatccttggtaaagtgc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agactatttgctaataatttattttcgttaagaaaagaaaacatatccttggtaaagtgc 500
Query: 300 cagttctcaacaagctgattcataacaagtctttctctgggaaaacagacgattgaatca 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagttctcaacaagctgattcataacaagtctttctctgggaaaacagacgattgaatca 560
Query: 360 ttctcaagtctttgctacctgaagtcattgtggctgtccataaatatctcaacctacggt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttctcaagtctttgctacctgaagtcattgtggctgtccataaatatctcaacctacggt 620
Query: 420 cttttttttttttttttttttggnagaatccaaattggctttgaatttgaggatacattc 479
| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 621 c-tttttttttttttttt---ggtagaatccaaattggctttgaatttgaggatacattc 676
Query: 480 cagtctctacttaccctagag 500
|||||||||||||||||||||
Sbjct: 677 cagtctctacttaccctagag 697
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 901
Length adjustment: 10
Effective length of query: 490
Effective length of database: 891
Effective search space: 436590
Effective search space used: 436590
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
