BAC Information

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BAC

Clone NameMSMg01-412A23
Chromosome5 (Build37)
Map Location 108,089,981 - 108,090,421
singlet/doubletsinglet
Overlap geneAW060207
Upstream geneZfp644, LOC100042400, EG666922, Hfm1, Cdc7, Tgfbr3, LOC666518, Brdt, LOC666535, Abhd7, 4921521K07Rik, LOC72342, 1700028K03Rik, Glmn
Downstream geneGfi1, LOC100042473, Evi5, 1700013N18Rik, Rpl5, 2900024C23Rik, LOC675566, Mtf2, Tmed5, Ccdc18, EG633606, LOC666614, Dr1, Pigg, Pde6b, Atp5k, Mfsd7, Pcgf3, LOC100042557, Cplx1, LOC100042571, Gak, Tmem175, Dgkq
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-412A23.T7 (MSMg01no412_a23.b1)MSMg01-412A23.TJ (MSMg01no412_a23.g1)
ACCAG508923AG508924
length781784
length of high quality
(start - end)		517 (46 - 562)439 (77 - 515)
definitionCHROMAT_FILE: MSMg01no412_a23.b1 PHD_FILE: MSMg01no412_a23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:29:18 2005CHROMAT_FILE: MSMg01no412_a23.g1 PHD_FILE: MSMg01no412_a23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:29:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGCTGCATTTCGCTGTTCTGCAAACTCTGTGCTTGATTGTTTTCC
TAGCATTTTTACATGGTCTTGGTCATAGTATCCCTTTACAACAGTAGAAA
AGTAACAAATAGACGGTGGTACCAGGTACTGGGGTACTTATGAGGTTGGC
CCGACCAAAAGTGGACTTTGGGCAAGATAAGTGGTTGAATGCTGTAGTGA
GGCCTCGTGGGCCAACCTAGTAGGAGCTTGGGAAACAGTATGGACTGTGG
AGGCCCAGCTTGAGGGGAACAGTATTAGCAACTGTGTTAGAGACCAGTTT
TTGATATTTTGCCAAGAATATGGTTGTTTTCTGCCCTTGTCCAGAAAAGT
CTGCTGGAGAGGTTGCCTAATTTACATTATAACACTAGCATAATTACAGT
TAGGAAGTAGCAATGAAAATAATTTTATAGTTGTGGATCACCACATGAAC
GGCAGGGCTGTAACATTAGGCAGGTTGAGAACCACCATTTTAGACTAATA
TCATTTGCAGAGGAGATTTCAAGACAACCTAGTATTGACTATGTCATATA
GGTATCAGTAATCTTATGCAGATCTACAGTGAAAAAGAGGAAGCCCGGGC
AAAAGTAATACAAAAAAGTCCAGTTTGAGAATCGCAGAGAACCCGTCAAG
TCTTAAATGTTGAAAAAAAATAAAGGGAGTGTGGGCCCCCGGTGATTAAA
AAAAACCCGGCCCTTGTGGAAACAAAGAAGG

NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTATCAGACATACTTGAAAACGCA
TAATGCCTAATTAGAAGTCGTTCTGGACCTCCTTTAATGGATACCAGTTA
AAAGGCACTTAATTAGCATATTTTAAACGTGTATAGACAGATGGTATTCA
AGTGGCTTACAGACTTTCAAGGATAGATGTTTCATGTAGACTTTATGCAC
ATTGCTCATATGCCCCATACTTTGTCAAATTACAAAGGATTATGAATGAC
CAAAAACCATATTACTTTTTTTATATAGATTTTTTTCTGCTTGCATGGTT
GGTTTTTATTAACCATGGGATATTGAGTATAAAAATTTTAACAGGAAGGC
ATAAGAAGAGAGAAACTGATCTTAGCACTAGAAGATCACTTAAGACTTGC
TCTGGGATGGACTATGAACAAGGTCTCTTCCAAGCAAACAACTATAGGAC
ATGATAATGATCCAGAAGAGATGGAACCTATAATGGCTGTGTAGATATTA
AAATATTTTAAGTGTTTTATCCACAGTTTGTTTGGTTCCCAGAGGTACCT
GAGGAAGACCGAAGAGAATGCTCCTCCCCACCCCGGTTGTTTTCCCCGGG
AGAATCCACGCGGGGACGAAGACAAAAGGGGAACTTTCCCCCGCACACAA
AAACCTTTTCCCCCCCGAAAGGGGGTTTTATTCCATAACCTCCAAACCAA
GATTTTTGGGGAAAAGGAGATCTATATTGTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no412_a23.g1 MSMg01no412_a23.g1 CHROMAT_FILE:
MSMg01no412_a23.g1 PHD_FILE: MSMg01no412_a23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:18 2005
         (439 letters)



>mm_chr5_108089781_108090621
          Length = 841

 Score =  818 bits (423), Expect = 0.0
 Identities = 436/441 (98%), Gaps = 2/441 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttatcagacatacttgaaaacgcataatgcctaattagaagtcgttctggacctccttta 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 ttatcagacatacttgaaaacgcataatgcctaattagaagtcattctggacctccttta 260

                                                                       
Query: 61  atggataccagttaaaaggcacttaattagcatattttaaacgtgtatagacagatggta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atggataccagttaaaaggcacttaattagcatattttaaacgtgtatagacagatggta 320

                                                                       
Query: 121 ttcaagtggcttacagactttcaaggatagatgtttcatgtagactttatgcacattgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcaagtggcttacagactttcaaggatagatgtttcatgtagactttatgcacattgct 380

                                                                       
Query: 181 catatgccccatactttgtcaaattacaaaggattatgaatgaccaaaaaccatattact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catatgccccatactttgtcaaattacaaaggattatgaatgaccaaaaaccatattact 440

                                                                       
Query: 241 ttttttatatagattttttt--ctgcttgcatggttggtttttattaaccatgggatatt 298
           ||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttcttatatagatttttttttctgcttgcatggttggtttttattaaccatgggatatt 500

                                                                       
Query: 299 gagtataaaaattttaacaggaaggcataagaagagagaaactgatcttagcactagaag 358
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagtgtaaaaattttaacaggaaggcataagaagagagaaactgatcttagcactagaag 560

                                                                       
Query: 359 atcacttaagacttgctctgggatggactatgaacaaggtctcttccaagcaaacaacta 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atcacttaagacttgctctgggatggactatgaacaaggtctcttccaagcaaacaacta 620

                                
Query: 419 taggacatgataatgatccag 439
           |||||||||||||||||||||
Sbjct: 621 taggacatgataatgatccag 641


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 841
Length adjustment: 9
Effective length of query: 430
Effective length of database: 832
Effective search space:   357760
Effective search space used:   357760
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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