Query= MSMg01no412_b16.b1 MSMg01no412_b16.b1 CHROMAT_FILE:
MSMg01no412_b16.b1 PHD_FILE: MSMg01no412_b16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:22 2005
(519 letters)
>mm_chr5_52049528_52050447
Length = 920
Score = 975 bits (504), Expect = 0.0
Identities = 516/520 (99%), Gaps = 1/520 (0%)
Strand = Plus / Minus
Query: 1 ctgaagag-aaactcacatcatcagacttggtggcaagtgacttttgactgagtcatttc 59
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 ctgaagagaaaactcacatcatcagacttggtggcaagtgacttttgactgagtcatttc 661
Query: 60 acccattctaaatgctattaatgttcttactagcttctagaatgggtgacttttaacatc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 acccattctaaatgctattaatgttcttactagcttctagaatgggtgacttttaacatc 601
Query: 120 acttctcatcccttaaaaaaattattatgtacacagaggtggaaattttgttctcttgtt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 acttctcatcccttaaaaaaattattatgtacacagaggtggaaattttgttctcttgtt 541
Query: 180 tgttgtttgttttagtggctttaatttgtttattaatttatttacatcccaaatgctgcc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 tgttgtttgttttagtggctttaatttgtttattaatttatttacatcccaaatgctgcc 481
Query: 240 tcccctattgtttcccgcttcacagagttcctctctcatgacacaccggtgtgagggcat 299
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tcccctattgtttcccacttcacagagttcctctctcatgacacaccggtgtgagggcat 421
Query: 300 acccaggggagccctccactctcagacccttttgggtgttaaggacaggcagaatggagc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 acccaggggagccctccactctcagacccttttgggtgttaaggacaggcagaatggagc 361
Query: 360 caattttcttctagtatcaggggatggcgaagctaatttgacatctagggtcacaattaa 419
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 360 caattttcttctagtatcaggggatggcgaagctaatttgacatctaggatcacaattaa 301
Query: 420 acatcagcgatgtttagttaaaaagaagatgggatgaagagctcctaatgctttggaaag 479
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 acatcagcaatgtttagttaaaaagaagatgggatgaagagctcctaatgctttggaaag 241
Query: 480 agcacagcatgcaaattaggtattgtgcagttgaaagaag 519
||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 agcacagcatgcaaattaggtattgtgcagttgaaagaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 920
Length adjustment: 10
Effective length of query: 509
Effective length of database: 910
Effective search space: 463190
Effective search space used: 463190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no412_b16.g1 MSMg01no412_b16.g1 CHROMAT_FILE:
MSMg01no412_b16.g1 PHD_FILE: MSMg01no412_b16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:22 2005
(485 letters)
>mm_chr5_51857811_51858698
Length = 888
Score = 924 bits (478), Expect = 0.0
Identities = 483/486 (99%), Gaps = 3/486 (0%)
Strand = Plus / Plus
Query: 1 ctttgtttcccacatgctaaatgtgaaaatagaagaaagagaccttaaggtctagacctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttgtttcccacatgctaaatgtgaaaatagaagaaagagaccttaaggtctagacctt 260
Query: 61 aaggcaaagacaaaaatctatccactattggccaagatttccagcaaagaatcagacttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaggcaaagacaaaaatctatccactattggccaagatttccagcaaagaatcagacttt 320
Query: 121 taacatgctgaagttggattagaaggatgaatagagttgctatctttaaaaaaaaaaaa- 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taacatgctgaagttggattagaaggatgaatagagttgctatctttaaaaaaaaaaaaa 380
Query: 180 --catttgcatccaatttttcaagacattaatttctaaacaggagatgaaaggagaagaa 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacatttgcatccaatttttcaagacattaatttctaaacaggagatgaaaggagaagaa 440
Query: 238 atcaaaatgtttaataacatttccaacttcttaagggctggaaggaactcagaacctttg 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atcaaaatgtttaataacatttccaacttcttaagggctggaaggaactcagaacctttg 500
Query: 298 gaaaaaagctggttgaaaaattattttcagaccagttttcactattgagaaggatggaac 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaaaaaagctggttgaaaaattattttcagaccagttttcactattgagaaggatggaac 560
Query: 358 atttatcaaataacttttagcttcaattttcacaaaggctagtttgctgatggggtggat 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atttatcaaataacttttagcttcaattttcacaaaggctagtttgctgatggggtggat 620
Query: 418 aataaaactgaagatttatgttgcattaaccgctgctgtaaatcctcgttacactaaaac 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aataaaactgaagatttatgttgcattaaccgctgctgtaaatcctcgttacactaaaac 680
Query: 478 acggga 483
||||||
Sbjct: 681 acggga 686
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 888
Length adjustment: 10
Effective length of query: 475
Effective length of database: 878
Effective search space: 417050
Effective search space used: 417050
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
