BAC Information

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BAC

Clone NameMSMg01-412M03
Chromosome5 (Build37)
Map Location 86,688,232 - 86,688,480
singlet/doubletsinglet
Overlap geneTmprss11c
Upstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr
Downstream geneTmprss11d, Tmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e, A730098D12Rik, LOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-412M03.T7 (MSMg01no412_m03.b1)MSMg01-412M03.TJ (MSMg01no412_m03.g1)
ACCAG509453AG509454
length760780
length of high quality
(start - end)
249 (74 - 322)464 (80 - 543)
definitionCHROMAT_FILE: MSMg01no412_m03.b1 PHD_FILE: MSMg01no412_m03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:14 2005CHROMAT_FILE: MSMg01no412_m03.g1 PHD_FILE: MSMg01no412_m03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGCGC
GGAATTCCAACTTATTTCANATTACAAAGTAAATTAAAGTTTAGAGTATG
CTTAAAACTTTTAACATGAATAAAAGAGGGTCACTGAGATAACATGTAAC
ATAGAAGCACTGGGCACAGCCTGATGACTCGAGTTCCATTCTAATACACT
CTGAATAACATGCATGCCAACACACATACAATAAATAATTTTCATTTTTA
AATGAATAAGACATCATGAGCAGAATGTCTGGATTAATTTGGGAAAATTG
TTTTGGAGGATTCTAAACAGAGTTATTTACTTGATTCAATATCAAAAGAG
GGCTATTTCATGTAACAATCGATTTAGGGATGTTGTTTAAAAATCATATT
CACATACCACCCTGGGTCCACCCTGGGTTGACAATAGACAAAAGCTGTTG
TGGCATATCATGTAACTTCATGACTAATACACTGAGGAAAGGAGGCGTCA
CAATTCCAAGCTAGAGACGGCTGTCTCATATTGAATTCTTCTCTCATTAC
AGCCTTATTGATATATAAATGGATATATAATATTTGCACACACTATTAAC
TGACTCGTTAGGCATCTGCCATCACCCCTATAATTCCCTCTTTATATGTC
CAGTGTATATCGTATTCTTTCTCTCATAATTAGGAATCCCATCTGATCTG
TTTGCTCATTTTTATTCCCTGCTTTGATTTTTACTCCCCTATTTGTTCCT
AATTCTCCAG
NCCGAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAAAACTGAATG
GCTGAGAAGCACCTGAAAAAATGTTCAACATTCTTGATCATCAGGGAAAT
GCAAATCAAAACAACCCTGAGATTCCATCTCACACCAGTCAGAATGGCTA
AGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGA
GGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTG
GAAATCAGTCTGGCCGTTCCTCAGAAAATTGGATAGTGTTACCGGAGGAT
CCTGCAATACCTCTCCTGGGCATATATCCAGAAGATGTTCCAACTGGTAA
TAAGGACACATGCTCCACTATGTTCATAGAAGCCTTATTTATAATAGCCA
AAACCTGGAAAGAACCCAAATGTCCCTCAACAGAGGCATGGATACAGAAA
ATGTGGTACATTTACACAATGAAGTACTACTCAGCTATTAAAAATAATGA
ACTTATGACATTTCTAGGCAAAAGGATGGACCTGGAGGCTGGTCACATCC
TTGAGTGAGGTAAACCCATTCACAATAAAACTGGAAATTGGACCCACTCG
GCCAATGAAAATTATCCCCCCATATTACGTAACCCTATAATTAAATAATA
CCATATTCTTAAATAAATGTATTTCCTATAATAATCCTAGTACATCACTA
TTGTTCATTCCTCCCCCTTTCTCAAAACGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no412_m03.b1 MSMg01no412_m03.b1 CHROMAT_FILE:
MSMg01no412_m03.b1 PHD_FILE: MSMg01no412_m03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:14 2005
         (249 letters)



>mm_chr5_86688032_86688680
          Length = 649

 Score =  458 bits (237), Expect = e-133
 Identities = 246/249 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acaaagtaaattaaagtttagagtatgcttaaaacttttaacatgaataaaagagggtca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 acaaagtaaattaaagtttagagtatgcttaaaacttttaacatgaataaaagagggtca 390

                                                                       
Query: 61  ctgagataacatgtaacatagaagcactgggcacagcctgatgactcgagttccattcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ctgagataacatgtaacatagaagcactgggcacagcctgatgactcgagttccattcta 330

                                                                       
Query: 121 atacactctgaataacatgcatgccaacacacatacaataaataattttcatttttaaat 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 329 atacactctgaataacatgcatgccaacacacacacaataaataattttcatttttaaat 270

                                                                       
Query: 181 gaataagacatcatgagcagaatgtctggattaatttgggaaaattgttttggaggattc 240
           ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 269 gaataagacatcatgagcaaaatgtctagattaatttgggaaaattgttttggaggattc 210

                    
Query: 241 taaacagag 249
           |||||||||
Sbjct: 209 taaacagag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)