Query= MSMg01no413_b04.b1 MSMg01no413_b04.b1 CHROMAT_FILE:
MSMg01no413_b04.b1 PHD_FILE: MSMg01no413_b04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:38 2005
(584 letters)
>mm_chr5_119503012_119503994
Length = 983
Score = 1029 bits (532), Expect = 0.0
Identities = 569/584 (97%), Gaps = 7/584 (1%)
Strand = Plus / Plus
Query: 4 ggaattctacacagccttgaaaagggagctgctataatgcacagtggccaagactcgtcc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctacacagccttgaaaagggagctgctataatgcacagtggccaagactcgtcc 263
Query: 64 cacagagagggtgaagggtgaagctggatagatctattcagataaagcttaaaacttgaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cacagagagggtgaagggtgaagctggatagatctattcagataaagcttaaaacttgaa 323
Query: 124 aacctaaaagctgccgaacagttagtgagggaa-cccctctctctggacaaagaaggaac 182
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 324 aacctaacagctgccgaacagttagtgagggaaacccctctctctggacaaagaaggaac 383
Query: 183 ataattctgattttcctagagatctcgtgtctcttcacttctagtctttaactggtaagg 242
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 384 ataattctgattttcctagagacctcgtgtctcttcacttctagtctttaactggtaagg 443
Query: 243 gaaggttttgggtttggtgcctcagcacataccactgctggaccctcatcgatattttca 302
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 444 gaaggttttgggtttggtgcctcagcacataccactgctggaccctcagcgatattttca 503
Query: 303 gggatggtcatgtgactcaaaggcagtccaagcactgactgctaccccacccccaccccc 362
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ggaatggtcatgtgactcaaaggcagtccaagcactgactgctaccccacccccaccccc 563
Query: 363 attccgagagtcacacacagtggaatcaagactcctggaaattacaagggagaacttaaa 422
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 564 attccgagagtcacacacaatggaatcaagactcctggaacttacaagggagaactta-- 621
Query: 423 tagagaatgaataggagcccggtgagccactggaagctgtgcggacac--ctggagagga 480
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 622 --gagaatgaataggagcccggtgagccactgggagctgtgcggacacacctggagagga 679
Query: 481 ggtatatcaaaatcagcatggctgggacacagagaggggccaatcttagccaacccgagc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ggtatatcaaaatcagcatggctgggacacagagaggggccaatcttagccaacccgagc 739
Query: 541 tgatttcccgcgtctgcctgctccatcatccacgtcagcaggac 584
||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 740 tgatttcccgcatctgcctgctccatcatccacgtcagcaggac 783
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 983
Length adjustment: 10
Effective length of query: 574
Effective length of database: 973
Effective search space: 558502
Effective search space used: 558502
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no413_b04.g1 MSMg01no413_b04.g1 CHROMAT_FILE:
MSMg01no413_b04.g1 PHD_FILE: MSMg01no413_b04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:39 2005
(418 letters)
>mm_chr5_119638096_119638913
Length = 818
Score = 801 bits (414), Expect = 0.0
Identities = 417/418 (99%)
Strand = Plus / Minus
Query: 1 cagaccctgatgggggagttatggtcctattgagcaaccaacctagggttttctttgatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 cagaccctgatgggggagttatggtcctattgagcaaccaacctagggttttctttgatc 559
Query: 61 tatgtgggtgatcctggagagtaatggagtcaagccgaccttccctggcctgtaggtctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tatgtgggtgatcctggagagtaatggagtcaagccgaccttccctggcctgtaggtctg 499
Query: 121 tggtcgcatgtgctactggaaagtcagcccgccccctcagtgggaatgatgccacgggac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tggtcgcatgtgctactggaaagtcagcccgccccctcagtgggaatgatgccacgggac 439
Query: 181 tgtgtctcatggagtccagttctgataatctatatatttagtgagtaccacacaacctat 240
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 438 tgtgtctcatggagtccagttctggtaatctatatatttagtgagtaccacacaacctat 379
Query: 241 ccttggccatcgtaataacatctcaatgtagacataccactgtggcctggaagttacagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ccttggccatcgtaataacatctcaatgtagacataccactgtggcctggaagttacagg 319
Query: 301 gaacaaaacagacaatccagccactctgaagagctttcttttgtgtgactacacagtagg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gaacaaaacagacaatccagccactctgaagagctttcttttgtgtgactacacagtagg 259
Query: 361 agaccctggctgagatctgagggtcacagcacctgaggccatcctttgcttatagtgt 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 agaccctggctgagatctgagggtcacagcacctgaggccatcctttgcttatagtgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 818
Length adjustment: 9
Effective length of query: 409
Effective length of database: 809
Effective search space: 330881
Effective search space used: 330881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
