Query= MSMg01no413_c03.b1 MSMg01no413_c03.b1 CHROMAT_FILE:
MSMg01no413_c03.b1 PHD_FILE: MSMg01no413_c03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:43 2005
(518 letters)
>mm_chr5_127249113_127250030
Length = 918
Score = 926 bits (479), Expect = 0.0
Identities = 506/515 (98%), Gaps = 2/515 (0%)
Strand = Plus / Plus
Query: 5 gaattctttctcc-tcatcccttccccccagccttggtttttaattcccaccaatgaaag 63
||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttctccaacatcccttcccccc-gccttggtttttaattcccaccaatgaaag 263
Query: 64 aatgaacatcaattccgaattccaagcatgggcaagcacgagttctcgtttgagtaactg 123
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 264 aatgaacatcaattccgaattccaagcatgggcaagcacgagttctcctttgagtaactg 323
Query: 124 ggattatattacacagcgacagattagagacttgtgcatacaatatgtatgagtcattac 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggattatattacacagcgacagattagagacttgtgcatacaatatgtatgagtcattac 383
Query: 184 ccaagctcatcttttaagaaaaacgaggagaaggtatttttagcaaagaaaagatttttt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ccaagctcatcttttaagaaaaacgaggagaaggtatttttagcaaagaaaagatttttt 443
Query: 244 ttccctccaaattggaaaacagcacaagagggattatttcccatctgaggaggcaagaac 303
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct: 444 ttccctccaaattggaaaacagcacaagagggaacatttcccatctgaggaggcaacaac 503
Query: 304 ttcagcccagttccaggaggcgggaggggtacgcgggaggggtatgcgcatcctgaacct 363
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttcagcacagttccaggaggcgggaggggtacgcgggaggggtatgcgcatcctgaacct 563
Query: 364 tgcactcgccaattcagctcaatttcaaaatgtgtgatctctcttctattctattgttac 423
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 564 tgcactcgccaattcagctcaatttcaaaatgtgtgatctcccttctattctattgttac 623
Query: 424 cgagacaccggagaaaaacaaatgaaacaaaggaagccgctatcaacagataatagacat 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cgagacaccggagaaaaacaaatgaaacaaaggaagccgctatcaacagataatagacat 683
Query: 484 ttctctcggagcttcaggggtgcatcgctgcggcg 518
|||||||||||||||||||||||||||||||||||
Sbjct: 684 ttctctcggagcttcaggggtgcatcgctgcggcg 718
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space: 461264
Effective search space used: 461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no413_c03.g1 MSMg01no413_c03.g1 CHROMAT_FILE:
MSMg01no413_c03.g1 PHD_FILE: MSMg01no413_c03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:43 2005
(444 letters)
>mm_chr5_127429937_127430782
Length = 846
Score = 816 bits (422), Expect = 0.0
Identities = 438/444 (98%), Gaps = 2/444 (0%)
Strand = Plus / Minus
Query: 1 tttggcccctttaaattagagaagtgtgtcattttaaatggtttccgtgggtacctttct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 tttggcccctttaaattagagaagtgtgtcattttaaatggtttccgtgggtacctttct 585
Query: 61 ctgtccagaagtttgggccagttatgaaaactgagcgatgctctcatgaaaccacaggca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 ctgtccagaagtttgggccagttatgaaaactgagcgatgctctcatgaaaccacaggca 525
Query: 121 ggcagccaggtgtcaggaagcagccaggcgtcaggaaacagaagagcatactggtaaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 ggcagccaggtgtcaggaagcagccaggcgtcaggaaacagaagagcatactggtaaaat 465
Query: 181 cctaagcaaagacgtgatgaaatatccgtctcctcaaaaataaaaaccgattcatcatac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 cctaagcaaagacgtgatgaaatatccgtctcctcaaaaataaaaaccgattcatcatac 405
Query: 241 ctagaaatttattttcctgggaagcagggaagcaggtgcatcgagttttggcaattaact 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 ctagaaattcattttcctgggaagcagggaagcaggtgcatcgagttttggcaattaact 345
Query: 301 cgtaaagctgtttccacaatgtctacttttctttcttaatgatatccttttctttctttc 360
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 344 cgtaaagctgtttccacaatgtctacttttctttcttaatgatatctttttttttctttc 285
Query: 361 tttttt--tttgcagatatgctgatgtacagctattctacctgcccatatttctttgcat 418
|||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 284 ttttttgttttgcagatatgctgatgtacagttattctacctgcccatatttctttgcat 225
Query: 419 atgcttaccctacgccacgatgag 442
||||||||||||||||||||||||
Sbjct: 224 atgcttaccctacgccacgatgag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 846
Length adjustment: 10
Effective length of query: 434
Effective length of database: 836
Effective search space: 362824
Effective search space used: 362824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
