BAC Information

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BAC

Clone NameMSMg01-413D03
Chromosome5 (Build37)
Map Location 56,060,320 - 56,060,656
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666380, EG666405
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-413D03.T7 (MSMg01no413_d03.b1)MSMg01-413D03.TJ (MSMg01no413_d03.g1)
ACCAG509786AG509787
length721725
length of high quality
(start - end)		573 (43 - 615)469 (72 - 540)
definitionCHROMAT_FILE: MSMg01no413_d03.b1 PHD_FILE: MSMg01no413_d03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:48 2005CHROMAT_FILE: MSMg01no413_d03.g1 PHD_FILE: MSMg01no413_d03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCATAACATTACCAAATTCATATAATATCTTTCCACGAATCCAGCCCTT
CAAAGGATAATAACAGAAAAAAAAAATACAAGGATAGAAACTCCGCCCTT
GAAAAAGCAACAAAGTAATCCTTCAACAATCCTAAAGGAAGACAGCCATA
AGGACAAAATCCCAACTTTAACAACAAAAATTACAGGAAGCAACAATTAC
TTTTCTTTAATTTCTCTTAACATCAATGGACTCAATTCCCCAATAAAAAG
ACATAGACTAATAGACTGGCTACACAAACAGGATCCAACATTTTGCTGCT
TACAGGAAACCCACCTCAGGGACAAAGACAGACACTCCCTCAGAGTAAAA
GGCTGGAAAACAATTTTCCAAGCAAATGGCCTGAAGGAACATGGTGGTGT
AGTCATTCTAATATAGAATAAAATTGACTTCAGACCCAAAGTTATCAAAA
AAGGACAAGAAGGGGCACTTCACATTCATCAGAGGTAAAATCTTCCAAGA
GGACCTCTCAATTCTGAATATCTATGCTCCAAATACAAGGGCAGCCACAT
TCATTAAAGAAATTTTAATAAAGCTCATAGCACACATTGCACCTCACATA
ATAATAGGGTGAGATTTCAACATCACACTCCTCACAATGGAAAGAACCTG
GAAAGAGAATCTATCCGAGAN

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGTAAATTTCTACCTATGTATCTAACTGG
CACCTCAAAAACAAAACAATTTTTCCCATGGCTAGAGAGAAAGAACACTG
CTTCAACGCACTTCTTGTCCTTGCAGAGGACCCAGGTTTAATTCCATGCA
CTCACTCACAACTTATTATAATTCTAGTTCTTATCTGGCATGAGATAAGC
ACATGTTGTAGATACACACATGCAAGCTAAACAGTAGTTCACATAAAATA
AAATAATCACTTAAAAATATTTCCAAAACTGACTTCATTGATATTCTCAA
TGGGTTTGTGCCATAGCCTGCCTCACCTTAGTGAATGGCAAGTATATTTT
CCTATGTGATTCACATATAGCTCTTCAAAATGATCAGTAGTATATTAAAT
AGTATGGTCCCATATCATCTTTAGAGGTATCCCTTTTAAATTTGAGATTG
TATTCATATTCATATTGACTAAAGAAAGGTCTTTTCAATGGAGTCTCAAT
GGGTATATCAGCCACACTTAAAGTATGTTTCAAGCTGTATACAGCCCATA
TAAAAAAAAAATCACTAGCATTTTTGAAATTTTTGCCCCATATTGCCTTT
GTTTGGAGACCTCCTATCCCCCTGGACCTTTCGGCTCCAAAAGAAGCGAT
TCCATATGGTTGTTTATTTCCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no413_d03.g1 MSMg01no413_d03.g1 CHROMAT_FILE:
MSMg01no413_d03.g1 PHD_FILE: MSMg01no413_d03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:48 2005
         (469 letters)



>mm_chr5_56059787_56060656
          Length = 870

 Score =  605 bits (313), Expect = e-177
 Identities = 331/337 (98%), Gaps = 1/337 (0%)
 Strand = Plus / Minus

                                                                       
Query: 134 ctcacaacttattataattctagttcttatctggcatgagataagcacatgttgtagata 193
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 870 ctcacaacttattataattctagttcctatctggcatgagataagcacatgttgtagata 811

                                                                       
Query: 194 cacacatgcaagctaaacagtagttcacataaaataaaataatcacttaaaaatatttcc 253
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 810 cacacatgcaagctaaacagtagttcacataaaataaaataatcacttaaaaataattcc 751

                                                                       
Query: 254 aaaactgacttcattgatattctcaatgggtttgtgccatagcctgcctcaccttagtga 313
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 750 aaaactgacttcattgatattctcaatgggtttgtgccatagcctgcctcaccttagtgt 691

                                                                       
Query: 314 atggcaagtatattttcctatgtgattcacatatagctcttcaaaatgat-cagtagtat 372
           ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 690 atggcaagtatattttcctatgtgattcatatatagctcttcaaaatgattcagtagtat 631

                                                                       
Query: 373 attaaatagtatggtcccatatcatctttagaggtatcccttttaaatttgagattgtat 432
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 630 attaaatagtatggtcccatatcatctttagaggtatcccttttaaagttgagattgtat 571

                                                
Query: 433 tcatattcatattgactaaagaaaggtcttttcaatg 469
           |||||||||||||||||||||||||||||||||||||
Sbjct: 570 tcatattcatattgactaaagaaaggtcttttcaatg 534


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 870
Length adjustment: 10
Effective length of query: 459
Effective length of database: 860
Effective search space:   394740
Effective search space used:   394740
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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