BAC Information

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BAC

Clone NameMSMg01-413I15
Chromosome5 (Build37)
Map Location 98,670,888 - 98,671,132
singlet/doubletsinglet
Overlap genenone
Upstream geneEG433923, EG666293, C80008, Gk2, Antxr2, EG435856, LOC666315, LOC666320, LOC666326, Prdm8
Downstream geneFgf5, 1700007G11Rik, Bmp3, Prkg2, LOC100041680, Rasgef1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-413I15.T7 (MSMg01no413_i15.b1)MSMg01-413I15.TJ (MSMg01no413_i15.g1)
ACCAG510050AG510051
length729740
length of high quality
(start - end)
248 (64 - 311)245 (68 - 312)
definitionCHROMAT_FILE: MSMg01no413_i15.b1 PHD_FILE: MSMg01no413_i15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:31:15 2005CHROMAT_FILE: MSMg01no413_i15.g1 PHD_FILE: MSMg01no413_i15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:31:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCAA
CTGATTCATACCAAAGGGCTGAGAAGCACTTGAAAAAATGTTCAACATCC
TTAATCATCAGCGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCAC
ACCAGTCAGAATGGCTAGGATCAAAAATTCAGGTAACAGCAGATGCTGAC
GATGATGTGGAGAAAGAGAAACACTCCTCCATTGCTGGTGGGATTGCAAG
CTGGTACAAGCCACTCTGGAAATCAGTCTGGGGTTTCCTCAGAAAACTGG
ACATAGTACTATCTTTTATATCCAGCAACACCTCTCGTGGGCATATACCC
AGAAGATGTTCCTACTGGTAATGAGGACACATGCTCCACTGTGTTCATAG
CAGCCTTATTTATAATAGCCAGAAGCTGGAAAGATCCCAGATGTCCCTCA
ACAGAAGAATGGATACAGAAAATGTGGTACATTTACACAATGGAGTTCTA
CTCAGCTATTAAAAACAATGGATTTATGAAATTCTTGGCCAAATGGATGT
ATCTGGAGGATATCATCCTGAGTGATGTAGCCCAATCATAAAAGAAGTCA
CTTGATATGCACTCACTGATAAGTGTATATTATTCCACAAACCTATAATA
CCCTAGATGCCTCTTTCCTAACATTATATAATCACTAAGGAAGAACTACG
CGTTGTATACTTCCTTCCTCCCCATAATG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTTTATATTTTTAACCCAAGAAGGTTTCTGTAA
TATGCCTTCGAAATGTAGGCAGGCTGGGGAAATTCCCCGACGAAAGTATG
CTTTGGAACTTACTGATTTGACAAATGGAGAGTCAGTTTAAGGCTTTATT
CTGGCACCACATGACAGGTGCCTTTGTTATCTGGAAGAGATACAGAGACC
CTCACGGAGAACACATGATGTAGGCAACTGAACATCATCACTTCAGTAAC
GGGGAAGGCTTATTTTTATCATTTCCTAGCCTCTAAGACTCTGCTATGAT
CGTTGTTAAGCTGGAGGGCTGTCATTTCTACACACGTCATCTGGTGTTAT
TATCTCTGATATTTATGTCAAAAGAAATCCCTTGCGATTTTTACAACTCT
AGTTGAATTGCATTTTCTTTACAGAATTTAAAGCCATCTCACTTAGAAAG
GGAAAAGCCCTTTTAAAATGTGGTCTACCACTGCCCTGGGAAGGGTTTCC
TGTCCCTTCTTGTGCACAGGGTGGTCAGTACCGATTTCCAAGCTACATCA
TTTTCCCATAAAAAGAAAAAAAGACAGGCCCGGGGGGCTGGTTCTTCTTT
TTTTATTGAGGAAAATAAAACTTTTAGAGTTTAAGACCCTTGGTTCTCTG
TTGGGGAAGCCCGGAAATTTTATGGGAGATAACTATCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no413_i15.g1 MSMg01no413_i15.g1 CHROMAT_FILE:
MSMg01no413_i15.g1 PHD_FILE: MSMg01no413_i15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:15 2005
         (245 letters)



>mm_chr5_98670688_98671332
          Length = 645

 Score =  466 bits (241), Expect = e-136
 Identities = 244/245 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttatatttttaacccaagaaggtttctgtaatatgccttcgaaatgtaggcaggctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttatatttttaacccaagaaggtttctgtaatatgccttcgaaatgtaggcaggctgg 260

                                                                       
Query: 61  ggaaattccccgacgaaagtatgctttggaacttactgatttgacaaatggagagtcagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaaattccccgacgaaagtatgctttggaacttactgatttgacaaatggagagtcagt 320

                                                                       
Query: 121 ttaaggctttattctggcaccacatgacaggtgcctttgttatctggaagagatacagag 180
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaaggctttattctggcatcacatgacaggtgcctttgttatctggaagagatacagag 380

                                                                       
Query: 181 accctcacggagaacacatgatgtaggcaactgaacatcatcacttcagtaacggggaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accctcacggagaacacatgatgtaggcaactgaacatcatcacttcagtaacggggaag 440

                
Query: 241 gctta 245
           |||||
Sbjct: 441 gctta 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)