Query= MSMg01no413_j01.b1 MSMg01no413_j01.b1 CHROMAT_FILE:
MSMg01no413_j01.b1 PHD_FILE: MSMg01no413_j01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:17 2005
(604 letters)
>mm_chr5_107117710_107118718
Length = 1009
Score = 1046 bits (541), Expect = 0.0
Identities = 587/605 (97%), Gaps = 5/605 (0%)
Strand = Plus / Plus
Query: 5 gaattccaatctatctgctgggtacaatgctttaaatttcatccctatttttaagtgaca 64
|||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaatatatcagttgggtacaatgctttaaatttcatccctatttttaagtgaca 264
Query: 65 ttctgagttctcaggcattcctttttctcaaccgcattt-----aatttcaacttgacac 119
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 265 ttctgagttctcaggcattcctttttctcaaccgcatttaattaaatttcaacttgacac 324
Query: 120 tttctccagaccctagaaacgactttctagacccacacgtccaattcagtaacagtatgt 179
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 325 tttctccagaccctagaaacgactttctatacccacacgtccaattcagtaacagtatgt 384
Query: 180 gtctagtctaaatagaaatatgtgctttatgtctgtagtagcatgtgattttaaagattt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtctagtctaaatagaaatatgtgctttatgtctgtagtagcatgtgattttaaagattt 444
Query: 240 gatatggatatcgaatgtaaatatttcagttatatattataacagcattttggatatact 299
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 445 gatatggatatcgaatgtaaatatttcagttatatattagaacagcattttggatatact 504
Query: 300 ggattgaaatatatttacattttggccaatttcttatttcagtgtgattacaatttaaac 359
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 505 ggattgaaatatatttacattttggccaatttcttatttcagtgtgactacaatttaaac 564
Query: 360 tcttataactcacctctattgtgcagtactgacctgtactgagagtcacgtggagatcag 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 565 tcttataactcacctctattgtgcagtactgacctgtactgagagtcacgtggagaccag 624
Query: 420 aagctggagtgtcccctcaactgctctaccctaggtctctcactaaccaggagcttacag 479
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 625 aagctggagtgtcccctcaactgctctaccctaggtctctcactaaccaggaacttacag 684
Query: 480 acttgactagactggttgctcgaaagccccgagaattaacctgtctacaccaccccagcc 539
||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||
Sbjct: 685 acttgactagactggctgctcgcaagccccgagaattaacctgtctataccaccccagcc 744
Query: 540 ctggaattatgggtatacactgtcatgccttttctctttcaaattgacagaaattgcctg 599
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ctggaattatgggtacacactgtcatgccttttctctttcaaattgacagaaattgcctc 804
Query: 600 tgtgt 604
|||||
Sbjct: 805 tgtgt 809
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1009
Length adjustment: 10
Effective length of query: 594
Effective length of database: 999
Effective search space: 593406
Effective search space used: 593406
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no413_j01.g1 MSMg01no413_j01.g1 CHROMAT_FILE:
MSMg01no413_j01.g1 PHD_FILE: MSMg01no413_j01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:17 2005
(475 letters)
>mm_chr5_107326265_107327139
Length = 875
Score = 903 bits (467), Expect = 0.0
Identities = 473/475 (99%)
Strand = Plus / Minus
Query: 1 tttgtgctttaagaggtttatttgcatagactctgtgtttccttactctgcgtcttctct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 tttgtgctttaagaggtttatttgcatagactctgtgtttccttactctgcgtcttctct 616
Query: 61 gtgctcttagctgaacttatccctgagagactgagatatacaggctgtgggctcccttag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 gtgctcttagctgaacttatccctgagagactgagatatacaggctgtgggctcccttag 556
Query: 121 agccaggacacataccaccccacccttcactctctaccaccctcttctgcccacagtaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 agccaggacacataccaccccacccttcactctctaccaccctcttctgcccacagtaca 496
Query: 181 gttgtcggtttcatacgatcaaaattctttcataaattcctcctctccttaagtgtgttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 gttgtcggtttcatacgatcaaaattctttcataaattcctcctctccttaagtgtgttt 436
Query: 241 gtttgtttgtttttgtgttttacataaaggaaatgtccttatgaatatatgccgatggca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gtttgtttgtttttgtgttttacataaaggaaatgtccttatgaatatatgccgatggca 376
Query: 301 gggagaaatacagaacacaataaaaaagttatgcctatcacttactaatgatgtattaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gggagaaatacagaacacaataaaaaagttatgcctatcacttactaatgatgtattaga 316
Query: 361 gttttaaatgctgctcttctttccatcactgtgacactagggactgaggaagggccctgt 420
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gttttaaatgctgctcttccttccatcactgtgacactagggactgaggaagggccctgt 256
Query: 421 gcattgaaggcaggcgcttcacagctgaccttctccccagccccatctttgcttc 475
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 255 gcattgaaggcaggcgcttcaccgctgaccttctccccagccccatctttgcttc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space: 402225
Effective search space used: 402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
