Query= MSMg01no413_j18.b1 MSMg01no413_j18.b1 CHROMAT_FILE:
MSMg01no413_j18.b1 PHD_FILE: MSMg01no413_j18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:20 2005
(623 letters)
>mm_chr5_49569302_49570324
Length = 1023
Score = 1164 bits (602), Expect = 0.0
Identities = 613/617 (99%)
Strand = Plus / Minus
Query: 7 gaattccccaaaggattcctattctcttgctaggatactaaactcatgaaaagaggaggt 66
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 gaattccccaaaggattcttattctcttgctaggatactaaactcatgaaaagaggaggt 764
Query: 67 tgagcactttctgaagagccaggcaaatggaattcttagtgggaaaagaggcatcaccat 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 tgagcactttctgaagagccaggcaaatggaattcttagtgggaaaagaggcatcaccat 704
Query: 127 gatattcacagtgatactgcatggaataaatctatattcttctccatactacgtttcttt 186
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 ggtattcacagtgatactgcatggaataaatctatattcttctccatactacgtttcttt 644
Query: 187 ctagcaaagagaatcttgtggcttctgccatctagttcatagtaaagtcatctggggatg 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 ctagcaaagagaatcttgtggcttctgccatctagttcatagtaaagtcatctggggatg 584
Query: 247 gtggttaacttgttgtgctaaagatgcttaacatttatctcctttaacttacttttccct 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 gtggttaacttgttgtgctaaagatgcttaacatttatctcctttaacttacttttccct 524
Query: 307 tgttatataaaatgttggtaattttaaatactacccacccatttggattgcttaacaagc 366
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 523 tgttatataaaatgttggtaattttaaatactacccacccatttgtattgcttaacaagc 464
Query: 367 aagatatcaacagtgctttgatatttctagaagcaatgaaaataataatgttcaacacta 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 aagatatcaacagtgctttgatatttctagaagcaatgaaaataataatgttcaacacta 404
Query: 427 agtaccactaacctgcttctttcctgtgtcataatccatatatttaaacagataattata 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 agtaccactaacctgcttctttcctgtgtcataatccatatatttaaacagataattata 344
Query: 487 tttttatcagctganattcatggatattggagaaatcatttttataggcagaatcttaca 546
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tttttatcagctgaaattcatggatattggagaaatcatttttataggcagaatcttaca 284
Query: 547 gtgtgatttaggcttcaattcaagatctagacatcttatcattgtgtagtgggctggaga 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 gtgtgatttaggcttcaattcaagatctagacatcttatcattgtgtagtgggctggaga 224
Query: 607 aatatattgcccatatg 623
|||||||||||||||||
Sbjct: 223 aatatattgcccatatg 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space: 620969
Effective search space used: 620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no413_j18.g1 MSMg01no413_j18.g1 CHROMAT_FILE:
MSMg01no413_j18.g1 PHD_FILE: MSMg01no413_j18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:20 2005
(471 letters)
>mm_chr5_49485459_49486329
Length = 871
Score = 812 bits (420), Expect = 0.0
Identities = 459/472 (97%), Gaps = 2/472 (0%)
Strand = Plus / Plus
Query: 1 ctggcatctgtcgctgtgg-cttccagtcattggaagatggtatttttgaagctcagaaa 59
||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||
Sbjct: 201 ctggcatctgtcgctgtggcctt-cagtcattggaagatggtatttttgaagttcagaaa 259
Query: 60 acaatgtgttgaactgactgtaaataactttaatgacagctttggatggtggccctcgag 119
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 260 acaatgtgttgaactgactgtaaataaccttaatgacagctttggacggtggccctcgag 319
Query: 120 atcccatgatatcttgtacaccactctgtgaagcctgcttcatagtctgccattcattgt 179
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 320 atcccatgacatcttgtacaccactctgtgaagcctgcttcatagtctgacattcattgt 379
Query: 180 acctaccactattaatcactaaaaaagtcctctgtaggaataaagagacaaagacgaatt 239
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct: 380 acctaccactattaatcactaaaaaattcctctgtaggaataaagagacaaagaccaatt 439
Query: 240 gaattctacagtattctgacttatactagcttgtacaaagaagcagagttccatatcttt 299
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gaattctacagtagtctgacttatactagcttgtacaaagaagcagagttccatatcttt 499
Query: 300 tcttaatggaaccaggaaaagctggaaggaagaaaaaaaaagtccatgaagaaagaagaa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tcttaatggaaccaggaaaagctggaaggaagaaaaaaaaagtccatgaagaaagaagaa 559
Query: 360 aaggaagaaagaatgttgagaataaaaagcagggcaggaagcgggttgggaggcctgagg 419
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 560 aaggaagaaagaatgttgaggataaaaagcagggcaggaagcgggttgggatgcctgagg 619
Query: 420 tttatatagtcatctgagaaagtcccttgatcacactgctatctcaccctta 471
||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 620 tttatatagtcatcttagaaagtcccttgatcacactgctatctcaccctta 671
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space: 396921
Effective search space used: 396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
