Query= MSMg01no414_f22.b1 MSMg01no414_f22.b1 CHROMAT_FILE:
MSMg01no414_f22.b1 PHD_FILE: MSMg01no414_f22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:23 2005
(276 letters)
>mm_chr5_32234435_32235112
Length = 678
Score = 499 bits (258), Expect = e-146
Identities = 270/274 (98%), Gaps = 2/274 (0%)
Strand = Plus / Minus
Query: 5 gaattctcctgtc-ttacttatgactcttagcttgctcggccac-aaatcaaagggcttc 62
||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 403 gaattctcctgtcaataattatgactcttagcttgctcggccacaaaatcaaagggcttc 344
Query: 63 atttgaggtccttggtctttatttaggaattagtaattggctgaagagatggatgtagta 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 atttgaggtccttggtctttatttaggaattagtaattggctgaagagatggatgtagta 284
Query: 123 gataagatttaaatttttactaaatgaggtttgggcaacaatataatggattattttaca 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 gataagatttaaatttttactaaatgaggtttgggcaacaatataatggattattttaca 224
Query: 183 tttgaaagtgaatacatgtgggctggagagatggttcagtagtcaagagtatgcactgct 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 tttgaaagtgaatacatgtgggctggagagatggttcagtagtcaagagtatgcactgct 164
Query: 243 tttccagagaacctgggtcccagtcccagcagcc 276
||||||||||||||||||||||||||||||||||
Sbjct: 163 tttccagagaacctgggtcccagtcccagcagcc 130
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 678
Length adjustment: 9
Effective length of query: 267
Effective length of database: 669
Effective search space: 178623
Effective search space used: 178623
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no414_f22.g1 MSMg01no414_f22.g1 CHROMAT_FILE:
MSMg01no414_f22.g1 PHD_FILE: MSMg01no414_f22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:23 2005
(428 letters)
>mm_chr5_32031337_32032164
Length = 828
Score = 770 bits (398), Expect = 0.0
Identities = 420/428 (98%), Gaps = 2/428 (0%)
Strand = Plus / Plus
Query: 1 ctatttgagggctggtggatgtttcagtaggtaatggcttgacaggagtttagtccctgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ctatttgagggctggtggatgtttcagtaggtaatggcttgacaggagtttagtccctgt 262
Query: 61 ggctcacatggtagaagaaagatttgactcacagtttgtcctctgactttacacgtgtgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ggctcacatggtagaagaaagatttgactcacagtttgtcctctgactttacacgtgtgt 322
Query: 121 catggcatggctgagagagcctgtgcatggctacacacacaatagaacaatgtaattata 180
|||||||||||| |||||||||||||||||| |||| |||||||||||| |||||||||
Sbjct: 323 catggcatggct--gagagcctgtgcatggctgcacatacaatagaacaacgtaattata 380
Query: 181 tgtaaaaaatgaattctcagttgatattcttacttttggatttgtagaattggtctatct 240
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtaaaaattgcattctcagttgatattcttacttttggatttgtagaattggtctatct 440
Query: 241 tggttttcctatgttaaacttcaaaacggcacattttcagtttttgaagatgatttaaaa 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggttttcccatgttaaacttcaaaacggcacattttcagtttttgaagatgatttaaaa 500
Query: 301 tgggtaaaagatacattcttacagcattggtctttatcccaaaccactcttccttttgcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgggtaaaagatacattcttacagcattggtctttatcccaaaccactcttccttttgcc 560
Query: 361 acagctggctttagtgcattgtctgcttcattaattttaatttagaaaagttttactgag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acagctggctttagtgcattgtctgcttcattaattttaatttagaaaagttttactgag 620
Query: 421 cattgttc 428
||||||||
Sbjct: 621 cattgttc 628
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space: 343161
Effective search space used: 343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
