Query= MSMg01no414_g03.b1 MSMg01no414_g03.b1 CHROMAT_FILE:
MSMg01no414_g03.b1 PHD_FILE: MSMg01no414_g03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:24 2005
(580 letters)
>mm_chr5_71311494_71312473
Length = 980
Score = 656 bits (339), Expect = 0.0
Identities = 565/749 (75%), Gaps = 172/749 (22%)
Strand = Plus / Plus
Query: 4 ggaattcaaatttattttatctcagttaattagtgtttaataattgtatgttcagaaata 63
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 32 ggaattcaaatttattttatttcagttaattagtgtttaataattgtatgttcagaaata 91
Query: 64 ttttatagttatcaattttttatgatacctatactcaattatgctatgcaatacaatttt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 ttttatagttatcaattttttatgatacctatactcaattatgctatgcaatacaatttt 151
Query: 124 caactaacagattcagtggtcatgatttaggataatgtatttttaagttttattgtttca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 caactaacagattcagtggtcatgatttaggataatgtatttttaagttttattgtttca 211
Query: 184 ttctt---------ac------------------------ctcgt--------------- 195
||||| || |||||
Sbjct: 212 ttctttttttttttactgttttttttaattaggtattttcctcgtttacattttcaatgc 271
Query: 196 -------aag----------------------------------------------tttt 202
||| ||||
Sbjct: 272 tatcccaaaggaaccccatacccaccccccccaatcccctacccacccactccccctttt 331
Query: 203 t---------------ctgta----------------ttgca------------------ 213
| ||||| |||||
Sbjct: 332 tggccctggcgttcctctgtactggggcatataaagtttgcaagtccacctcataaagtt 391
Query: 214 -------------ggaatttttaagtcaatacatctttgtttttgctagcctattttaga 260
|||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 392 tttatgtatttcaggaatttttaagtcaatacacctttgtttttactagcctattttaga 451
Query: 261 gtaagagcatcatacaaatagttaagacatatcaaagactgtttctgaagtgtttttgtt 320
||||| |||||||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct: 452 gtaagcgcatcatacaaatagttaagacatattaatgattgtttctgaagtgtttttgtt 511
Query: 321 ttcttgtaaaatggttatcaaatcttcaaaacgtaacatgtcctaaatcattttcaaaac 380
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 512 ttcttgtaaaatggttatcaaatcttcaaaatgtaacatgtcctaaatcattttcaaaac 571
Query: 381 atggg-atacttcagaagtgacgactcctggatgaggttattgctataaatggaaatcta 439
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 atggggatacttcagaagtgacgactcctggatgaggttattgctataaatggaaatcta 631
Query: 440 catatgttctgaatatctctagttgctccactggcattatc--------tgagatggata 491
|||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 632 tatatgttctgaatatctctagttgctccactggcattatcaagtggtctgagatggata 691
Query: 492 gtttaggggcgtaattctagaagaacaaaactctacaaagcaagttcataagttatatta 551
|||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 692 gtttagggccctaattctagaaggacaaaactctacaaagcaagttcataagttatatta 751
Query: 552 tatgactgtagaagttaatcatatttcaa 580
|||||||||||||||||||||||||||||
Sbjct: 752 tatgactgtagaagttaatcatatttcaa 780
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space: 552900
Effective search space used: 552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no414_g03.g1 MSMg01no414_g03.g1 CHROMAT_FILE:
MSMg01no414_g03.g1 PHD_FILE: MSMg01no414_g03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:24 2005
(248 letters)
>mm_chr5_71486204_71486851
Length = 648
Score = 478 bits (247), Expect = e-139
Identities = 247/247 (100%)
Strand = Plus / Minus
Query: 1 atgtccctccccagaaacgtatattcgcaactacaataaaaatccaagagccagtccggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 atgtccctccccagaaacgtatattcgcaactacaataaaaatccaagagccagtccggc 388
Query: 61 ggctgcacgctggcccggctcttttacagtctccaactttgcacacactggcagcgctgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ggctgcacgctggcccggctcttttacagtctccaactttgcacacactggcagcgctgc 328
Query: 121 ctgcctgctcagcggcgtctgatccggagcctcacgctcctttggtagtcttggctcaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ctgcctgctcagcggcgtctgatccggagcctcacgctcctttggtagtcttggctcaga 268
Query: 181 gcagctgtcaaatgcatagttcgcagcacttgatttccaccctgctgcctcttgaacatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gcagctgtcaaatgcatagttcgcagcacttgatttccaccctgctgcctcttgaacatg 208
Query: 241 gacgtgg 247
|||||||
Sbjct: 207 gacgtgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space: 152721
Effective search space used: 152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
