NGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCCTTTTGTTACAAAGTTATCGTTGAATGCATTATTTCAACA
TGAAAACATTTTCAAGAGCCAGTGGACAAATATGCAAGCGAAACCAGTGA
GTCACCAACCCAGAGTTTAACACTGACAAGGACGCAAGGGTTGATCCTTT
TGAACATTAATGAATAAAACATTCAAAATTCATCTGAACCCTTAGAGATG
CTAAGAAGATATATAGGGGTTCCTTTGAATTCAACTAGAGCTGTGAAAAC
TGACTTGAATCCAGCACTGCNAATTTTTTTTTTTNNGAAAAAACGGCCCG
GGGAATACCCAGGGTTTTTTAGACGGGAGAAGAGTCTCAGTCCCTCTTAA
AATTCCAGCTCCAGACCTACAAATCCAAGGNNNNNNNNNNNNNNNNNAGG
CCCAAACAAGGGGGGCGTGCCACCCCCTTAAATTTTAAATTTCTCAAAAA
TATAGCATTTAAAAAAACCCCCCTCCCTTTTTTTTAAAAAAAAAGGGGGT
CCCGGGGGCCCTCTCTTNTGCAGAAAATAACGCTCCCCTCTTTCATGCGN
CNNNTNGNGNGGGTGNNNGCCTATGCCCTTTGGTCTTAATAAATTTTTTG
TGTTTTTAAAAACTCACCGGTGTGGGTGGGGTTGATCCCTCCCCTTAATC
CTTGGGCGGGTGCGGTGTTTGGTGCTCGGATGTTTGTTTTTTCTGAACGC
TAAAAACATACCTTTTTCAGCCCTTGCATCATAGTCATTTTTTATTCTGC
G

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCTGGGAAATGAATGCATAAATGAT
GGAATAAATAAATGAAAGGATTCTTTGTAAACCTGGAACTCAAATGTTAA
AGACACGTTCTGTTGTAAACACCCTGAAGTGTATTTATGAGGAATAATAA
CCATTTGGAAAAAATAAGCATCTGAAGGTATGTGGTGGCAGTCTCTCTTA
TGTCGCTTCTGGGACACAAAGGTAGACTGGATGGGGACAAGAAGTGAAAG
AAAAGAATGTAGAGAAGTGAGTTATAATGATATGCCTACTAAAGCTTACA
GCCTTGTCTTATGATATTGACCAAAGTTTAACAAACTATACTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTNTTTTTTTTNTTTNTTNTTT
TTTTTTTTTTTTNTTTTTTNTTTTTTTTTTTTTNTTTTTTNNNNNNNNNN
NNNNTNTNTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTN
TTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTNTTNTTTTNNTTTT
TTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTNTNNNTNNTNTTTT
TNNTNNNTTTTTTTTTTTTTTTTTTNNTTTTNNNNTTNNTTTNTNTTTTT
TTTTTTTTTTTTNTNTTTNNNTTNNTTTTTTTTNTTTTNTNTTNTTNTTT
TTTTT

Query= MSMg01no414_i13.b1 MSMg01no414_i13.b1 CHROMAT_FILE:
MSMg01no414_i13.b1 PHD_FILE: MSMg01no414_i13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:36 2005
         (184 letters)



>mm_chr5_81877152_81877735
          Length = 584

 Score =  325 bits (168), Expect = 1e-93
 Identities = 180/184 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   agttatcgttgaatgcattatttcaacatgaaaacattttcaagagccagtggacaaata 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agttatcattgaatgcattatttcaacatgaaaacattttcaagagccagtggacaaata 325

                                                                       
Query: 61  tgcaagcgaaaccagtgagtcaccaacccagagtttaacactgacaaggacgcaagggtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgcaagcgaaaccagtgagtcaccaacccagagtttaacactgacaaggacgcaagggtt 265

                                                                       
Query: 121 gatccttttgaacattaatgaataaaacattcaaaattcatctgaacccttagagatgct 180
           |||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 264 gatcctttcgaacattaatgaataaaacagtcaaaattcatctgaacccttagcgatgct 205

               
Query: 181 aaga 184
           ||||
Sbjct: 204 aaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 184
Length of database: 584
Length adjustment: 8
Effective length of query: 176
Effective length of database: 576
Effective search space:   101376
Effective search space used:   101376
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no414_i13.g1 MSMg01no414_i13.g1 CHROMAT_FILE:
MSMg01no414_i13.g1 PHD_FILE: MSMg01no414_i13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:36 2005
         (355 letters)



>mm_chr5_81655584_81656338
          Length = 755

 Score =  663 bits (343), Expect = 0.0
 Identities = 352/355 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctgggaaatgaatgcataaatgatggaataaataaatgaaaggattctttgtaaacctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctgggaaatgaatgcataaatgatggaataaataaatgaaaggattctttgtaaacctg 260

                                                                       
Query: 61  gaactcaaatgttaaagacacgttctgttgtaaacaccctgaagtgtatttatgaggaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaactcaaatgttaaagacacgttctgttgtaaacaccctgaagtgtatttatgaggaat 320

                                                                       
Query: 121 aataaccatttggaaaaaataagcatctgaaggtatgtggtggcagtctctcttatgtcg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aataaccatttggaaaaaataagcatctgaaggtatgtggtggcagtctctcttatgtcg 380

                                                                       
Query: 181 cttctgggacacaaaggtagactggatggggacaagaagtgaaagaaaagaatgtagaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttctgggacacaaaggtagactggatggggacaagaagtgaaagaaaagaatgtagaga 440

                                                                       
Query: 241 agtgagttataatgatatgcctactaaagcttacagccttgtcttatgatattgaccaaa 300
           ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtgagttaaaatgaaatgcctactaaagcttacagccttgtcttatgatattgaccaaa 500

                                                                  
Query: 301 gtttaacaaactatactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 355
           ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 501 gtttaacaaactatactgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 555


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 755
Length adjustment: 9
Effective length of query: 346
Effective length of database: 746
Effective search space:   258116
Effective search space used:   258116
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)