Query= MSMg01no414_i16.b1 MSMg01no414_i16.b1 CHROMAT_FILE:
MSMg01no414_i16.b1 PHD_FILE: MSMg01no414_i16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:37 2005
(562 letters)
>mm_chr5_14476302_14477263
Length = 962
Score = 1035 bits (535), Expect = 0.0
Identities = 553/559 (98%)
Strand = Plus / Minus
Query: 4 ggaattcatactttttatcagactttctcctggatatagttattatgattaagttagaaa 63
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 ggaattcatactttaaatgagactttctcctggatatagttattatgattaagttagaaa 703
Query: 64 ataaaagaattatgtttgtacatatttggaaacagcttgttttctcaaaatggtcagtat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 ataaaagaattatgtttgtacatatttggaaacagcttgttttctcaaaatggtcagtat 643
Query: 124 aaatacagtaactaggacaagacaaattaatgaataatgctatactacataatattatag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 aaatacagtaactaggacaagacaaattaatgaataatgctatactacataatattatag 583
Query: 184 catataataaatcatagatttctgaagatagtggtcaggtcaactactcatatcagcatg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 catataataaatcatagatttctgaagatagtggtcaggtcaactactcatatcagcatg 523
Query: 244 tatattctgtaatatgactaacattttgagaagtttttttatgaaataggtaagtagcat 303
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 522 tatattctgtaatatgactaacattttgagaagttagtttatgaaataggtaagtagcat 463
Query: 304 gtttttagtattaccatcatctttaccatcttctttttaatatgctttcccaataattca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 gtttttagtattaccatcatctttaccatcttctttttaatatgctttcccaataattca 403
Query: 364 tagtacaattgaaaattactatttactatcactcttcaaattcaactaaataagagttgt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 tagtacaattgaaaattactatttactatcactcttcaaattcaactaaataagagttgt 343
Query: 424 cattatatttggtgctgacacatggggcagtaatgtgttggcccataatcaactttgttt 483
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 342 cattatatttggtgctgacacatggggcagtaatgtgttggcccataatcaactttattt 283
Query: 484 agtgactactgttcagatggtttttgaaggttgagtattactagaagaaaattttaaggt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 agtgactactgttcagatggtttttgaaggttgagtattactagaagaaaattttaaggt 223
Query: 544 atccaaaattttctaagca 562
|||||||||||||||||||
Sbjct: 222 atccaaaattttctaagca 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space: 525504
Effective search space used: 525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no414_i16.g1 MSMg01no414_i16.g1 CHROMAT_FILE:
MSMg01no414_i16.g1 PHD_FILE: MSMg01no414_i16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:37 2005
(556 letters)
>mm_chr5_14266972_14267929
Length = 958
Score = 959 bits (496), Expect = 0.0
Identities = 544/560 (97%), Gaps = 6/560 (1%)
Strand = Plus / Plus
Query: 1 cacagaattccacagatggagacagaaaggtctgctatagacagcatctgctacagacag 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 cacagaattccacagatggagacagaagggtctgctatagacagcatctgctacagacag 260
Query: 61 ttagcaaaagtcaggct-aaaatgaaaattttaattaaaattactaacactggacagaag 119
||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 261 ttagcaaaagtcaggctaaaaatgaaaatttaaattaaaattactaacactggacagagg 320
Query: 120 taggctttcccatctcctattaa-ttaaaaaaa-ctatttcag-agtctaagtcacgcaa 176
||||||||||||||||||||||| ||||||||| ||||||||| | |||||| |||||||
Sbjct: 321 taggctttcccatctcctattaatttaaaaaaatctatttcagta-tctaaggcacgcaa 379
Query: 177 aattttattgagaatgttttcaaaaataaagattattgggttggtgatgttggaaattct 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aattttattgagaatgttttcaaaaataaagattattgggttggtgatgttggaaattct 439
Query: 237 gccacaaaactataatatatagtaatgtttggggcaattgtctgaaaatatgctaatcct 296
||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gccacaaaactataaaagaaagtaatgtttggggcaattgtctgaaaatatgctaatcct 499
Query: 297 atctgctatttaaaactgcaatgccaggggaagtgtggacactaaagcttattccaagtt 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 atctgctatttaaaactgcaatgccaggggaagtgtggacactaaagcttattccaagtt 559
Query: 357 gacattttacaaaacacaagggagcacattttcatcattggtcctttatgaacagatggc 416
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 560 gacattttacaaaacacaagggagtacattttcatcattggtcctttatgaacagatggc 619
Query: 417 tgcctacagccattgccaaagctctccttgaaggtctctcttcctagacacttcatcact 476
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 620 tgcctacagccattgccaaagctctccttgaaggtctctcttcctagacacgtcatcact 679
Query: 477 gtctgtaggaggcaatagcaaaagttaagagaaccaagaaacctaaagcgtggaataagt 536
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 680 gtctgtaggaggcaatagcaaa-gtaaagagaaccaagaaacctaaagcgtggaataagt 738
Query: 537 cctggggttaactggatgat 556
||||||||||||||||||||
Sbjct: 739 cctggggttaactggatgat 758
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 958
Length adjustment: 10
Effective length of query: 546
Effective length of database: 948
Effective search space: 517608
Effective search space used: 517608
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
