Query= MSMg01no414_j20.b1 MSMg01no414_j20.b1 CHROMAT_FILE:
MSMg01no414_j20.b1 PHD_FILE: MSMg01no414_j20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:43 2005
(532 letters)
>mm_chr5_104799640_104800571
Length = 932
Score = 978 bits (506), Expect = 0.0
Identities = 526/534 (98%), Gaps = 4/534 (0%)
Strand = Plus / Minus
Query: 1 gcttcttgaactggatattagccatcaacaaagttctaaactgtcttatatatttctttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 gcttcttgaactggatattagccatcaacaaagttctaaactgtcttatatatttctttc 673
Query: 61 tgttgtaaagtatttgattgtgaacttcaaatacatacaaagtataggcttcataacgag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 tgttgtaaagtatttgattgtgaacttcaaatacatacaaagtataggcttcataacgag 613
Query: 121 tgatcatctacccttggccagcctcgctagacagtttttgctgtgtcttgtttctttcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 tgatcatctacccttggccagcctcgctagacagtttttgctgtgtcttgtttctttcat 553
Query: 181 atttgagctcacttgagtgttcatttctcctacccaaatgactaacacatgttccaggcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 atttgagctcacttgagtgttcatttctcctacccaaatgactaacacatgttccaggcc 493
Query: 241 taaaggcatttttgtattggggactactttaagattggggcatttaaagaaca--cgcgt 298
|||||||||||||||| |||||||||||||||||||||||||||||||||||| | |
Sbjct: 492 taaaggcatttttgtaatggggactactttaagattggggcatttaaagaacatcccc-- 435
Query: 299 tcccctgtcattgtcccgagatttcaacttatccttctaacgtcttttatttccttcatt 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tcccctgtcattgtcccgagatttcaacttatccttctaacgtcttttatttccttcatt 375
Query: 359 ttcctttctcatcatcatttcatgctggggtgacagctggctcccaaacccaactctagg 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ttcctttctcatcatcatttcatgctggggtgacagctggctcccaaacccaactctagg 315
Query: 419 agaaactcacataacctcacctagcccatgcatatgcttccgtagcaggctaccggaccg 478
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 314 agaaactcacataaccacacctagcccatgcatatgcttccgtagcaggctaccgaaccg 255
Query: 479 cacaagccatcagggctgccatccctcccagacttccggactccccactttggt 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 cacaagccatcagggctgccatccctcccagacttccggactccccactttggt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space: 481284
Effective search space used: 481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no414_j20.g1 MSMg01no414_j20.g1 CHROMAT_FILE:
MSMg01no414_j20.g1 PHD_FILE: MSMg01no414_j20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:43 2005
(517 letters)
>mm_chr5_104597900_104598816
Length = 917
Score = 977 bits (505), Expect = 0.0
Identities = 514/517 (99%), Gaps = 1/517 (0%)
Strand = Plus / Plus
Query: 1 ttttcccattggtaacgtagaagaccactacttaattgagttagcttaggctcaacaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttcccattggtaacgtagaagaccactacttaattgagttagcttaggctcaacaaac 260
Query: 61 agactttatacaacttaacttccttcacatttatgaaaaattaatcagtatcggcactga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agactttatacaacttaacttccttcacatttatgaaaaattaatcagtatcggcactga 320
Query: 121 aaaggcagaaacaggtagaactccatgagtttcaggccagcctgatctacatagtgaatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaggcagaaacaggtagaactccatgagtttcaggccagcctgatctacatagtgaatt 380
Query: 181 ctaggacaagcagggctaggtagagataccctatctcaaaaaaccaaaacccaaaaacat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctaggacaagcagggctaggtagagataccctatctcaaaaaaccaaaacccaaaaacat 440
Query: 241 tacgtttaagtattatttagttttgaccctaaatgtttgtcttagtgaaggtcccaaatg 300
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tacgtttaagcag-atttagttttgaccctaaatgtttgtcttagtgaaggtcccaaatg 499
Query: 301 ctcttagcaaatgtttctttgtgtagttggagagtgttgtgtgctaatacagctatcaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ctcttagcaaatgtttctttgtgtagttggagagtgttgtgtgctaatacagctatcaag 559
Query: 361 cacttctgtttagacaccgaagatcttcttaactctccatcaggtctggagagctgttca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cacttctgtttagacaccgaagatcttcttaactctccatcaggtctggagagctgttca 619
Query: 421 aatctgctattacaaccaagttaggaagaggaaggcaattcctgaggaaagtggcattct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aatctgctattacaaccaagttaggaagaggaaggcaattcctgaggaaagtggcattct 679
Query: 481 taaatatgattggccctttaagatgctcaaagaacca 517
|||||||||||||||||||||||||||||||||||||
Sbjct: 680 taaatatgattggccctttaagatgctcaaagaacca 716
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space: 459849
Effective search space used: 459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
