BAC Information

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BAC

Clone NameMSMg01-415C13
Chromosome5 (Build37)
Map Location 113,868,173 - 113,868,713
singlet/doubletsinglet
Overlap genenone
Upstream geneSez6l, EG625464, Myo18b, Adrbk2, Crybb2, LOC100042920, Crybb3, 2900026A02Rik, Gm854, Rutbc2, Aym1
Downstream geneC530024P05Rik, Cmklr1, LOC381707, D5Ertd40e, Sart3, LOC100041786, Iscu, Tmem119, Selplg, Coro1c, Ssh1, Dao1, Svop, Usp30, Alkbh2, Ung, Acacb, Foxn4, Myo1h, Kctd10, Ube3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-415C13.T7 (MSMg01no415_c13.b1)MSMg01-415C13.TJ (MSMg01no415_c13.g1)
ACCAG511283AG511284
length764721
length of high quality
(start - end)
170 (72 - 241)541 (67 - 607)
definitionCHROMAT_FILE: MSMg01no415_c13.b1 PHD_FILE: MSMg01no415_c13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:27 2005CHROMAT_FILE: MSMg01no415_c13.g1 PHD_FILE: MSMg01no415_c13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTCAATAGAGCCGCGGAATTCACTT
CTTTTCTCAAATTCTTTGGAGTTTCCCTTTTAAGTCATATCATCTGCACC
TGGGACTGCATCGATATTTGTCTTAGGGTTTTACTGCTGTGAACAGACAC
CATAACCAAGGCAACTCTTAAAAGGATGGCATTTAATTGGGACTGGCTTA
CAGGTTCAAAAGTTCAGTCTGTTATCATCAAGGCAGGAGCATGGCAGCGT
CCAGGCAGGCATGTTACAGGAGGGGCTGAGAGCTCTACATCTTCATCTGA
AGACTGTTATTTTTAATACTGGCTTCCAGGCAGCTAGGATGAGGGTCTTA
AAGCCCACACCCACAGTGACACACCTACTCTAACTAAGCCACAGCTACTC
CAATAAGGCCACACCCACTCCAACAGGTCCATACCTCCTAATATTGTCAT
TCCCTGGGTCGAGCATATACTAACCATCACCCTAACTCTAACTTCTTTTC
AAATGCTCCCCCATTTGCTTACCTCCTATTTTACGCCCGGCAACCTCCTT
ACTTGTCACTCTCCTGCTTTGTCCCCAACTCCTCCCTGGTCCATATGTTA
TACCCTTGTAACCCTCCTAACTCCTCCTGGCCCTCTTTCCCTTCGGCTCC
TATCGTCTCCTTTTCGTGCCTAGTCCTCCTACTCCCCCACGGACCAGGAC
CGCCTTTTACGTACCACTCGTCCCACCCTCTTTATCTTCCATTTTACCCG
CCCTCTACCCCTCT
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXTACCAGCAAAAGTCTCACTTCAGGATCCAGGTCTAGTTTCATGTATGG
GATCAATTGGAACATATTCTTAGACTCACCGCCATCAGCGGTGCTCCCAG
GGGTCATTTGTGGTGTGGACCGGGGCCCCTACAGCTCCAGGCTAATTGAG
GAGCCAACAGCTGATACCCAATAGACTCTAATAGACTCCAGTATACACAG
ACCCACAGAGATGCTGAGTCTGAGTGGTGTAGGGCCCAAGGGAATGCCCA
CCACTGGNTTTAGTTGTTCCAGGCTATTGAGCCCATCCCTAGAGAGAGCT
GAAGACAGAATCTCAACCAGCACAGAGGAAAGTGATTACTGAAAAGTGTT
GGAATTAAGGAAATAATTCTCTAGGATTTTTTAATTAAAACCTCCAACCC
AAGAAGCCTGTTAATTTCAGTGTCTGAAGCGGCTCTCCTGCCTCTCAGCA
CCTGCTGCCTGTGTGATGTCTAAAGCGGCTCTCTTGGTACTCAGCATCCT
GCAGTCTCAAGTAGCTGCTGCCTCTTGAGTTCCTTAACTTGTGAGGACTT
CACACTGTGGGTGGCAGGTGGGTGATCCCCAACTATATGTTTATTCTGTC
CCTCCACAAGTGCATCCCTGTGGAGAGAACACCCCTCTATGCTGTAATTC
TCTCCTAGGGTTGAATGCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no415_c13.g1 MSMg01no415_c13.g1 CHROMAT_FILE:
MSMg01no415_c13.g1 PHD_FILE: MSMg01no415_c13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:27 2005
         (541 letters)



>mm_chr5_113867973_113868913
          Length = 941

 Score =  909 bits (470), Expect = 0.0
 Identities = 524/542 (96%), Gaps = 2/542 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcacttcaggatccaggtctagtttcatgtatgggatcaattggaacatattcttagact 60
           |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 741 tcacttcaggatccaggtctagtttcgtgtatgggatcaattggaagatattcttagact 682

                                                                       
Query: 61  caccgccatcagcggtgctcccaggggtcatttgtggtgtggaccggggcccctacagct 120
           |||||| |||||||||||| |||| ||||| ||||||| |||||||||||||||||||||
Sbjct: 681 caccgcgatcagcggtgcttccagaggtcagttgtggtatggaccggggcccctacagct 622

                                                                       
Query: 121 ccaggctaattgaggagccaacagctgatacccaatagactctaatagactccagtatac 180
           |||| |||||||||||||||||||||||||||||||||||||||||||| ||||| | ||
Sbjct: 621 ccagcctaattgaggagccaacagctgatacccaatagactctaatagattccaggacac 562

                                                                       
Query: 181 acagacccacagagatgctgagtctgagtggtgtagggcccaagggaatgcccaccactg 240
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 561 acagacccacagagatgctgagtctgagtggtgtagggcccaagggaaggcccaccactg 502

                                                                       
Query: 241 gntt-tagttgttccaggctattgagcccatccctagagagagctgaagacagaatctca 299
           | || ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 501 g-ttctaggtgttccaggctattgaacccatccctagagagagctgaagacagaatctca 443

                                                                       
Query: 300 accagcacagaggaaagtgattactgaaaagtgttggaattaaggaaataattctctagg 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 accagcacagaggaaagtgattactgaaaagtgttggaattaaggaaataattctctagg 383

                                                                       
Query: 360 attttttaattaaaacctccaacccaagaagcctgttaatttcagtgtctgaagcggctc 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 attttttaattaaaacctccaacccaagaagcctgttaatttcagtgtctgaagcggctc 323

                                                                       
Query: 420 tcctgcctctcagcacctgctgcctgtgtgatgtctaaagcggctctcttggtactcagc 479
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tcctgcttctcagcacctgctgcctgtgtgatgtctaaagcggctctcttggtactcagc 263

                                                                       
Query: 480 atcctgcagtctcaagtagctgctgcctcttgagttccttaacttgtgaggacttcacac 539
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 atcctgcagtctcaagtggctgctgcctcttgagttccttaacttgtgaggacttcacac 203

             
Query: 540 tg 541
           ||
Sbjct: 202 tg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space:   494361
Effective search space used:   494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)