Query= MSMg01no415_e18.b1 MSMg01no415_e18.b1 CHROMAT_FILE:
MSMg01no415_e18.b1 PHD_FILE: MSMg01no415_e18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:38 2005
(465 letters)
>mm_chr5_73562830_73563693
Length = 864
Score = 806 bits (417), Expect = 0.0
Identities = 456/478 (95%), Gaps = 16/478 (3%)
Strand = Plus / Plus
Query: 1 tgccctttcaaaaggctttgctttagttctcagtagaaggtagcctccatgcaacacaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgccctttcaaaaggctttgctttagttctcagtagaaggtagcctccatgcaacacaac 260
Query: 61 accagtaaaaccatcaggaaggcttagagaacactgctgtctaggagggagggatctgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accagtaaaaccatcaggaaggcttagagaacactgctgtctaggagggagggatctgaa 320
Query: 121 cacagtgaaccctgatactctggaaagctggagctaacttaaaatatcacactctccaat 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacagtgagccctgatactctggaaagctggagctaacttaaaatatcacactctccaat 380
Query: 181 gttttgagagaattcctcaattgccgaactcatttcaggaaacaaacacaagaccttgga 240
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 gttttgagagaattcctcaattgccgaactcatttcaggaaaggaacacaagaccttgga 440
Query: 241 tcggcccccatattt--aagagcttcatcaacatctcaaaaactcttaaaacacccaaat 298
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcggcccccata---ggaagagcttcatcaacatctcaaaaactcttaaaacacccaaat 497
Query: 299 tagcattcatggaaaagagggaaaagaatgtgagctcttctccccggaaatatcacatgg 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tagcattcatggaaaagagggaaaagaatgtgagctcttctccccggaaatatcacatgg 557
Query: 359 ccttccgctc-----------tctctcccacagatccctccctcttcagaacactctcat 407
|||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ccttccgctcctagagcctcttctctcccacagatccctccctcttcagaacactctcat 617
Query: 408 cttcgctggagcttanaaaagaggttgaaaggctttacaggaatgatgctctctggtc 465
||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||
Sbjct: 618 cttcgctggagcttagaaaagaggttgaaaggctttaaaggaatgatgctctccggtc 675
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 864
Length adjustment: 10
Effective length of query: 455
Effective length of database: 854
Effective search space: 388570
Effective search space used: 388570
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no415_e18.g1 MSMg01no415_e18.g1 CHROMAT_FILE:
MSMg01no415_e18.g1 PHD_FILE: MSMg01no415_e18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:38 2005
(349 letters)
>mm_chr5_73738971_73739719
Length = 749
Score = 534 bits (276), Expect = e-156
Identities = 297/304 (97%)
Strand = Plus / Minus
Query: 1 agtgtgcagaataatgaagctacatctgaggactcttaaatttaaaatgatcttcaatta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 agtgtgcagaataatgaagctacatctgaggactcttaaatttaaaatgatcttcaatta 427
Query: 61 cttggagttttttataggacgctaacccaaagctacaccaagcagagaaaatgtgattgg 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 cttggagtttttgataggacgctaacccaaagctacaccaagcagagaaaatgtgattgg 367
Query: 121 gcttcacttatgttcatcgagccctaaaacctgacctggggcagctctcaacgtagttca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gcttcacttatgttcatcgagccctaaaacctgacctggggcagctctcaacgtagttca 307
Query: 181 tgaaaaacctaaaaactgaatcacaaagtacagggcattcccatggctactatcttttct 240
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 306 tgaaaaacctgaaaactgaatcacaaagtacagggcattcccatggctactatcaactca 247
Query: 241 caagccacactgtatctatttatggcaactgagcacactcgagaattatatatatatata 300
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 246 caagccacactgtatctatttatggcaactgagcacactcgagaattttatatatatata 187
Query: 301 tata 304
||||
Sbjct: 186 tata 183
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 71
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 749
Length adjustment: 9
Effective length of query: 340
Effective length of database: 740
Effective search space: 251600
Effective search space used: 251600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|