BAC Information

Click to search

BAC

Clone NameMSMg01-415E18
Chromosome5 (Build37)
Map Location 73,563,030 - 73,739,456
singlet/doubletdoublet
Overlap geneFryl, Ociad1, Ociad2
Upstream geneAtp10d, Corin, Nfxl1, Zar1, EG545758, Cnga1, LOC384275, Npal1, Txk, Tec, Slain2, Slc10a4, LOC667127
Downstream geneLOC667154, LOC100042205, C130090K23Rik, LOC627733, Dcun1d4, BC031901, Sgcb, Spata18, Usp46, 2700023E23Rik, Rasl11b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-415E18.T7 (MSMg01no415_e18.b1)MSMg01-415E18.TJ (MSMg01no415_e18.g1)
ACCAG511389AG511390
length752753
length of high quality
(start - end)
465 (58 - 522)349 (74 - 422)
definitionCHROMAT_FILE: MSMg01no415_e18.b1 PHD_FILE: MSMg01no415_e18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:38 2005CHROMAT_FILE: MSMg01no415_e18.g1 PHD_FILE: MSMg01no415_e18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,563,030 - 73,563,504)(73,739,153 - 73,739,456)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAT
AATTCACTGCCCTTTCAAAAGGCTTTGCTTTAGTTCTCAGTAGAAGGTAG
CCTCCATGCAACACAACACCAGTAAAACCATCAGGAAGGCTTAGAGAACA
CTGCTGTCTAGGAGGGAGGGATCTGAACACAGTGAACCCTGATACTCTGG
AAAGCTGGAGCTAACTTAAAATATCACACTCTCCAATGTTTTGAGAGAAT
TCCTCAATTGCCGAACTCATTTCAGGAAACAAACACAAGACCTTGGATCG
GCCCCCATATTTAAGAGCTTCATCAACATCTCAAAAACTCTTAAAACACC
CAAATTAGCATTCATGGAAAAGAGGGAAAAGAATGTGAGCTCTTCTCCCC
GGAAATATCACATGGCCTTCCGCTCTCTCTCCCACAGATCCCTCCCTCTT
CAGAACACTCTCATCTTCGCTGGAGCTTANAAAAGAGGTTGAAAGGCTTT
ACAGGAATGATGCTCTCTGGTCTATTACATAATTACCAGTCACAAAATGC
AACAGGGAAAAAAAATGCTGCGACAATAGCCTCCTGGTTTGCTTTGAGGC
CTCATTAAATAGCCCAATATTAATGGCATCCACCCCTATTTTCTATTCGA
ATGGGTCCTGGAAGGGCTCACGCCTAAACCGGCTTTGTCCAAATTTTTTA
CAAAGGGACGTTTCCCTCCCTTATATCCCTCCACCCCTTATCCTAATAAC
CN
GGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCCAGTGTGCAGAATAATGAAGCTACATCT
GAGGACTCTTAAATTTAAAATGATCTTCAATTACTTGGAGTTTTTTATAG
GACGCTAACCCAAAGCTACACCAAGCAGAGAAAATGTGATTGGGCTTCAC
TTATGTTCATCGAGCCCTAAAACCTGACCTGGGGCAGCTCTCAACGTAGT
TCATGAAAAACCTAAAAACTGAATCACAAAGTACAGGGCATTCCCATGGC
TACTATCTTTTCTCAAGCCACACTGTATCTATTTATGGCAACTGAGCACA
CTCGAGAATTATATATATATATATATATATATATATATATATATATATAT
ATATATATATATATATATATATACGATGCGCGAGAGAGAGAGCGAGAGCG
AGCGAGCGAGAGTGTTCGCTTGATCCTCCCTCCCCTCCCCCCTACTGTTC
CCTTTTTCCTCTCTCCCTTTCCCTTTCTTTCTCCCTCCTTTTTTTCGTCC
TCCCCTTTCTCCCCTTTTCTCTCCCCTTTCCTTTCTTTTCATCTTTTTTT
CCCTTGCCTTCCTTTCTTCTTCCCCTCTTTCCTTTCTTCCCTCTTTCTCC
ACGTCCCCCCTTCCTCCCCTTTTCTTTTCCCCCCTTTTATCTTCTCTCCT
TTTCCTCTCCTCCTTCTCTTTCCCCTGGTGTTTCTCCTCCTCTTTTCTTT
TTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no415_e18.b1 MSMg01no415_e18.b1 CHROMAT_FILE:
MSMg01no415_e18.b1 PHD_FILE: MSMg01no415_e18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:38 2005
         (465 letters)



>mm_chr5_73562830_73563693
          Length = 864

 Score =  806 bits (417), Expect = 0.0
 Identities = 456/478 (95%), Gaps = 16/478 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgccctttcaaaaggctttgctttagttctcagtagaaggtagcctccatgcaacacaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgccctttcaaaaggctttgctttagttctcagtagaaggtagcctccatgcaacacaac 260

                                                                       
Query: 61  accagtaaaaccatcaggaaggcttagagaacactgctgtctaggagggagggatctgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accagtaaaaccatcaggaaggcttagagaacactgctgtctaggagggagggatctgaa 320

                                                                       
Query: 121 cacagtgaaccctgatactctggaaagctggagctaacttaaaatatcacactctccaat 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacagtgagccctgatactctggaaagctggagctaacttaaaatatcacactctccaat 380

                                                                       
Query: 181 gttttgagagaattcctcaattgccgaactcatttcaggaaacaaacacaagaccttgga 240
           ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 381 gttttgagagaattcctcaattgccgaactcatttcaggaaaggaacacaagaccttgga 440

                                                                       
Query: 241 tcggcccccatattt--aagagcttcatcaacatctcaaaaactcttaaaacacccaaat 298
           ||||||||||||     |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcggcccccata---ggaagagcttcatcaacatctcaaaaactcttaaaacacccaaat 497

                                                                       
Query: 299 tagcattcatggaaaagagggaaaagaatgtgagctcttctccccggaaatatcacatgg 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tagcattcatggaaaagagggaaaagaatgtgagctcttctccccggaaatatcacatgg 557

                                                                       
Query: 359 ccttccgctc-----------tctctcccacagatccctccctcttcagaacactctcat 407
           ||||||||||           |||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ccttccgctcctagagcctcttctctcccacagatccctccctcttcagaacactctcat 617

                                                                     
Query: 408 cttcgctggagcttanaaaagaggttgaaaggctttacaggaatgatgctctctggtc 465
           ||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||
Sbjct: 618 cttcgctggagcttagaaaagaggttgaaaggctttaaaggaatgatgctctccggtc 675


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 864
Length adjustment: 10
Effective length of query: 455
Effective length of database: 854
Effective search space:   388570
Effective search space used:   388570
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no415_e18.g1 MSMg01no415_e18.g1 CHROMAT_FILE:
MSMg01no415_e18.g1 PHD_FILE: MSMg01no415_e18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:38 2005
         (349 letters)



>mm_chr5_73738971_73739719
          Length = 749

 Score =  534 bits (276), Expect = e-156
 Identities = 297/304 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgtgcagaataatgaagctacatctgaggactcttaaatttaaaatgatcttcaatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 agtgtgcagaataatgaagctacatctgaggactcttaaatttaaaatgatcttcaatta 427

                                                                       
Query: 61  cttggagttttttataggacgctaacccaaagctacaccaagcagagaaaatgtgattgg 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 cttggagtttttgataggacgctaacccaaagctacaccaagcagagaaaatgtgattgg 367

                                                                       
Query: 121 gcttcacttatgttcatcgagccctaaaacctgacctggggcagctctcaacgtagttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gcttcacttatgttcatcgagccctaaaacctgacctggggcagctctcaacgtagttca 307

                                                                       
Query: 181 tgaaaaacctaaaaactgaatcacaaagtacagggcattcccatggctactatcttttct 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||   || 
Sbjct: 306 tgaaaaacctgaaaactgaatcacaaagtacagggcattcccatggctactatcaactca 247

                                                                       
Query: 241 caagccacactgtatctatttatggcaactgagcacactcgagaattatatatatatata 300
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 246 caagccacactgtatctatttatggcaactgagcacactcgagaattttatatatatata 187

               
Query: 301 tata 304
           ||||
Sbjct: 186 tata 183


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 71
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 749
Length adjustment: 9
Effective length of query: 340
Effective length of database: 740
Effective search space:   251600
Effective search space used:   251600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)