BAC Information

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BAC

Clone NameMSMg01-415H17
Chromosome5 (Build37)
Map Location 63,239,348 - 63,239,502
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041543, Centd1
Downstream gene3110047P20Rik, LOC100042133, 0610040J01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-415H17.T7 (MSMg01no415_h17.b1)MSMg01-415H17.TJ (MSMg01no415_h17.g1)
ACCAG511531AG511532
length742741
length of high quality
(start - end)		559 (37 - 595)526 (66 - 591)
definitionCHROMAT_FILE: MSMg01no415_h17.b1 PHD_FILE: MSMg01no415_h17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:53 2005CHROMAT_FILE: MSMg01no415_h17.g1 PHD_FILE: MSMg01no415_h17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAACA
CCCTATTCTCACAAATGGACAGATCCTGGAAACAGAAAATAAACAGAGAC
ACATGGAAACTAACAGAAGTTATGAAACAAATGGATTCAATAGATATCTC
AAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCATCACCTC
ATGATAATTCCTCCAAAATGGACCATATAATCGGTCACAAAACAGGCCTC
AACAGAGACAAAAATATTAAAATTATCCCATGCATCCTATCTGATCACCA
CGGACTAAGGTTGATCTTCAATAACAGCACAAATAATAAAAAGCCAACAT
TCACAAGGAAACTGAACAACACTCTACTCAACGATATCTTGGTCAAGGAT
GAAATAAAGAAAGAAATTAAAGATGTTTTAGAGTTTAATGAAAATGAAGC
TATGACATACCCAAACGTAAGTGACACAATGAAGGTGGTCCTAAGAGGGA
AACTCATAACCCTGAGGGCCTCCAAAAAGAAACTAGAGAGAGCACACACT
AACAGCCTGACAGCACACCTAAAAGCTCTAGAGCTAAAGGAAGCAAATTC
ACTCAAGAGGAGTCGGTGGCAAAATAATCAAACTCACGGCTGAAATAAAT
CAAGAAGAAAGCAAAAGCACTATTTCTAGAATCCACCAAAGGATGGAGCC
TCTAGAGATTGGCCTATCCTGGGAACCCTTAATAAATAAGCG

TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCTGGAGAGTAGCACTTCAGTTTGAAGTTTCACTGC
AAGCCTAACTATTTTTGTTTGCATACAGATGCAGAATAGCAATAGAATCC
AATTATTTCTTTTCCTTTGCTATTGCACTGTCATTTATTCAGCGTTTGAT
ATATACCATGTCTGTGAACATATATAATTCTAAAATTATATATAAAATAT
ATAGTTCTAAAATCCATTTTCCTTTATTCCTTTCTTTCCTTTCCTGTTTG
TAAGAGGCTTCTTGTTAAACCAAGATTAAAATCCAAAATTTTTCTAAGTT
TTTGGCAGGCATCTAAAACTTCTAATTTATTTAATCTGAGGGCAAATTTT
TGAGAAAACACACAATCTCTATACACTAAATGTCTCAAATAGCCTAAAAG
TTTACCATGTTAAATCTTTTTTGAAGCCATTATTAGTCCACACTTAGTTA
AATATTTTATAGCCATCTGTAAAAACGCTCTCTATTTTCTGCAACCAACA
AAAACACCATTGACAAAATGAATTATATATATTTTATTCATATTATATCA
GGTCTTTTTAAAGTAATTATGGCAAGCAAGTGATATTTCTCCCCCTTTAA
ACATGAGGAAGAGCAGGGGTTCCAAAATCTTCTAGTGGGAAACCTGGAAA
AAAATCCCCCACTGACTTATGGTGGGGGGGGAAAAAACTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no415_h17.g1 MSMg01no415_h17.g1 CHROMAT_FILE:
MSMg01no415_h17.g1 PHD_FILE: MSMg01no415_h17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:53 2005
         (526 letters)



>mm_chr5_63239148_63240073
          Length = 926

 Score =  284 bits (147), Expect = 8e-81
 Identities = 153/155 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctggagagtagcacttcagtttgaagtttcactgcaagcctaactatttttgtttgcata 60
           ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 ctggagagtagaacttcagtttgaagtttcactgcaagcctcactatttttgtttgcata 260

                                                                       
Query: 61  cagatgcagaatagcaatagaatccaattatttcttttcctttgctattgcactgtcatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagatgcagaatagcaatagaatccaattatttcttttcctttgctattgcactgtcatt 320

                                              
Query: 121 tattcagcgtttgatatataccatgtctgtgaaca 155
           |||||||||||||||||||||||||||||||||||
Sbjct: 321 tattcagcgtttgatatataccatgtctgtgaaca 355


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 926
Length adjustment: 10
Effective length of query: 516
Effective length of database: 916
Effective search space:   472656
Effective search space used:   472656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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