Query= MSMg01no415_k13.b1 MSMg01no415_k13.b1 CHROMAT_FILE:
MSMg01no415_k13.b1 PHD_FILE: MSMg01no415_k13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:06 2005
(586 letters)
>mm_chr5_40988773_40989764
Length = 992
Score = 986 bits (510), Expect = 0.0
Identities = 554/572 (96%), Gaps = 6/572 (1%)
Strand = Plus / Plus
Query: 21 acaaaatcatccacaactgaaatctatcctaggaagtgaaaagagaatctagatggtgcc 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 acaaaatcatccacaactgaaatctatcctaggaagtgaaaagagaatctagatggtgcc 280
Query: 81 tgattcaacctcatgaaatgacagttatatccattg------ctatgttacccaggaggg 134
|||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 281 tgattcaacctcatgaaatgacagttatatccattgctatgtctatgttacccatgaggg 340
Query: 135 ttacttgagtttcttcatgtttgattccaaatggccaagactatcattgggcttttaaat 194
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ttacttgagtttcttcatgtttgattccaaatggccaagactatcattgggcttttaaaa 400
Query: 195 tatgtgtggcctgcagttctcacaggaagcgtttctaaaatcttcccacctttctcttag 254
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 401 tatgtgtggcctgcagttctcacaggaagtgtttctaaaatcttcccacctttctcttag 460
Query: 255 cctctgtcatttgtgatgttctcatggtgtgtctcgctcatacttatttttagacaaatt 314
|||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||
Sbjct: 461 cctctgtcatttgtgaggcactcatggtgtgtctcgctcatactaatttttagacaaatt 520
Query: 315 aaagttggagacaatcaatcctatatttttgagtgaaaaatgtcaacactctgtttattt 374
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 521 aaagttggagacaatcaatcctatatttttgagtgaaaaatgtcaacaccctgtttattt 580
Query: 375 ggatttgtaataaacgtgatacaagaatgtgatgatatttttgctatcaaaatgacagat 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 ggatttgtaataaacgtgatacaagaatgtgatgatatttttgctatcaaaatgacagat 640
Query: 435 agttgtcagtgaatgacacctctctcatatcatttaaggaagaaatgctcaatcttgtaa 494
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 641 agttgtcagtgaatgacacctctctcatatcatttaaggaagaaatgctccatcttgtaa 700
Query: 495 aattgcaaggagagagtggtaaccccaggcaacactttatatgagtatcatcttctgttc 554
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 701 aattgcaaggagagagtggtaaccccagggaacactttatatgagtatcatattctgttc 760
Query: 555 aagctgatatttattccaaatctttgtttctg 586
|||||||||||||||||| |||||||||||||
Sbjct: 761 aagctgatatttattccagatctttgtttctg 792
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 992
Length adjustment: 10
Effective length of query: 576
Effective length of database: 982
Effective search space: 565632
Effective search space used: 565632
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no415_k13.g1 MSMg01no415_k13.g1 CHROMAT_FILE:
MSMg01no415_k13.g1 PHD_FILE: MSMg01no415_k13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:06 2005
(241 letters)
>mm_chr5_41168038_41168678
Length = 641
Score = 451 bits (233), Expect = e-131
Identities = 239/241 (99%)
Strand = Plus / Minus
Query: 1 ttcagaaacatatttccattgaactatatgtatagctgttgactatacacacccttatta 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 ttcagaaacatatttccattgaactatatgtatagctgttgactatacacacccctatta 382
Query: 61 tgcttttgattatacgttttaactcaaatctgaatatatggtctgattaaggtttctttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcttttgattatacgttttaactcaaatctgaatatatggtctgattaaggtttctttt 322
Query: 121 aatttgttgaagttttgatgtcataatttattagatatagtagattaaagatgatacaaa 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 aatttgttgaagttttgatgtcataatttattagatatagtagattaaagatgagacaaa 262
Query: 181 gttacttggaattgaaatataatattgaaattaaatcactgacttttctttatcaagaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttacttggaattgaaatataatattgaaattaaatcactgacttttctttatcaagaat 202
Query: 241 t 241
|
Sbjct: 201 t 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space: 146624
Effective search space used: 146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
