BAC Information

Click to search

BAC

Clone NameMSMg01-415N01
Chromosome5 (Build37)
Map Location 64,641,409 - 64,815,570
singlet/doubletdoublet
Overlap geneTbc1d1, Ppia-ps22
Upstream gene3110047P20Rik, LOC100042133, 0610040J01Rik, AA536743, LOC100041636, LOC100041646, Pgm1
Downstream geneLOC433894, LOC100042198, Klf3, Tlr1, Tlr6, 9130005N14Rik, Tmem156, Klhl5, Wdr19, Rfc1, Klb, Rpl9, Lias, Ugdh
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-415N01.T7 (MSMg01no415_n01.b1)MSMg01-415N01.TJ (MSMg01no415_n01.g1)
ACCAG511784AG511785
length689689
length of high quality
(start - end)
509 (71 - 579)516 (80 - 595)
definitionCHROMAT_FILE: MSMg01no415_n01.b1 PHD_FILE: MSMg01no415_n01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:18 2005CHROMAT_FILE: MSMg01no415_n01.g1 PHD_FILE: MSMg01no415_n01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,641,409 - 64,641,917)(64,815,055 - 64,815,570)
sequence
CCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTGTTTTCCATGGTGCCCACCTTGGTCAGTTATTCTCCTGTG
CTCAGTCTTCTCCCTGTGTAGTCAGACTTGGTAGCTCTGCCTCTGACAAT
TTGCCCATGTCTGTGAAATGTGATTGGAACTCACCACACAGTGTGGTTGG
GAGCCCACCTTGCGGTGTGGCTGCTTTTTGCCCCATTCATCCATGGCTGA
AGTCTCAAATAAATTGATTGGCTTAGCCTTGCACAGAGGAGACATTCCTG
TGATGGAAAAGCCTCATCTTAGGGTCTGATGAGGGACAAGTGATAAAGAC
CTGGACCCAGCTGACATTAGGAAATGGCACAAGGGATGGGTCTCTTCTAA
AGATGCAGATGTTAGGGCCCTGCCTCCCAACAGACAGCCCCCATTAGACT
CTGGCAACAGACATAAGGGTTAGGAGCACTGACCATTCTGGTGCACCGCC
AACTTTGAGTTAAGAGTTGGTGTATTCAGCGGGAGGGGTTAGACTGAGGA
GCCATGTTTTGTCCAGGTTATATTCAGCAAGCTGAAGAGTTCTAGCAGCA
CCAGTGCTGCCAACCAATGTCTCAGCTTGTCAGATTGCTTTATAAACTGT
CCAACTTAATTATTAACTTTGCGCGCTCTGCGTAACTAT
NCCGCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGAGGACTGAATCCACTAAAC
CAAACTGCTTATGCTAAGACACTGTGTTACAGCCTCCTGGCTGGACTGAG
ATGCCTTCTTTATAGTGGACATTTTAGCAAGCAATGTCCTTCCTCAGTGG
TATCTGAAGAGCAGAGACCTGTACACTTCAACCCTGAAAACAAGTGAAAG
AATGAAATGAAATCCTTAAGCCAGCTCTACACGGTCCCTGTACATGGGAA
TAATCTGAAGGAGGTACTCTGCAGACCCAGAGGACGGTGACATAACAGGT
CTGCTTTTTCCTGTAGCCCCTTCTTACGGCATCAGAACCAGTTTGAACAG
GTTTCAAAGAAGGCATGGGGTGGGGTTGGTTTTAGCCTCGTTTCTGGCAG
GATGGGAAATACTGACAATCAGATTGCATTTTCTTGCTTAAATGTGAGCT
GGTTCTATACAAGACCAGAGATGTGCTGTGTGTGGCACTTTAGAAATTCC
TCTGCCTCCATTAAGTGCAGAAACAGTTCAGAGAGTAACATATAGATAAT
GTAATGTAAGATAAGGAGACATTTTAAGCAGTAGCTGAAGAGTTGACACA
GGAGAATCTCAGGTTTGAGTCTAGCCTGGGCTACATACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no415_n01.b1 MSMg01no415_n01.b1 CHROMAT_FILE:
MSMg01no415_n01.b1 PHD_FILE: MSMg01no415_n01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:18 2005
         (509 letters)



>mm_chr5_64641209_64642117
          Length = 909

 Score =  915 bits (473), Expect = 0.0
 Identities = 500/509 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgcccaccttggtcagttattctcctgtgctcagtcttctccctgtgtagtcagacttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtgcccaccttggtcagttattctcctgtgctcagtcttctccctgtgtagtcagacttg 260

                                                                       
Query: 61  gtagctctgcctctgacaatttgcccatgtctgtgaaatgtgattggaactcaccacaca 120
           ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 gtagctctgtctctgacaatttgcccatgtctgtgaaatgtggttggaactcaccacaca 320

                                                                       
Query: 121 gtgtggttgggagcccaccttgcggtgtggctgctttttgccccattcatccatggctga 180
           ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 gtgtggttgggggcccaccttgcggtgtggctgctttttgccccattcatccttggctga 380

                                                                       
Query: 181 agtctcaaataaattgattggcttagccttgcacagaggagacattcctgtgatggaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 agtctcaaataaattgattggcttagccttgcacagaggagacattcctatgatggaaaa 440

                                                                       
Query: 241 gcctcatcttagggtctgatgagggacaagtgataaagacctggacccagctgacattag 300
           |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 441 gcctcaccttagggtctgatgagggacaactgataaagacctggacccagctgacattag 500

                                                                       
Query: 301 gaaatggcacaagggatgggtctcttctaaagatgcagatgttagggccctgcctcccaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaaatggcacaagggatgggtctcttctaaagatgcagatgttagggccctgcctcccaa 560

                                                                       
Query: 361 cagacagcccccattagactctggcaacagacataagggttaggagcactgaccattctg 420
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagacagccccctttagactctggcaacagacataagggttaggagcactgaccattctg 620

                                                                       
Query: 421 gtgcaccgccaactttgagttaagagttggtgtattcagcgggaggggttagactgagga 480
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 621 gtgcaccgccaactttgagttaagagttggtgtattcagtgggaggggttagactgagga 680

                                        
Query: 481 gccatgttttgtccaggttatattcagca 509
           |||||||||||||||||||||||||||||
Sbjct: 681 gccatgttttgtccaggttatattcagca 709


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space:   448601
Effective search space used:   448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no415_n01.g1 MSMg01no415_n01.g1 CHROMAT_FILE:
MSMg01no415_n01.g1 PHD_FILE: MSMg01no415_n01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:18 2005
         (516 letters)



>mm_chr5_64814855_64815770
          Length = 916

 Score =  936 bits (484), Expect = 0.0
 Identities = 508/516 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgaggactgaatccactaaaccaaactgcttatgctaagacactgtgttacagcctcctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 tgaggactgaatccactaaaccaaactgcttatgctaagacactgtgttacagcctcctg 657

                                                                       
Query: 61  gctggactgagatgccttctttatagtggacattttagcaagcaatgtccttcctcagtg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 656 gctggactgagatgccttctttatagtggacattttagcaagcaatgtccttactcagtg 597

                                                                       
Query: 121 gtatctgaagagcagagacctgtacacttcaaccctgaaaacaagtgaaagaatgaaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 gtatctgaagagcagagacctgtacacttcaaccctgaaaacaagtgaaagaatgaaatg 537

                                                                       
Query: 181 aaatccttaagccagctctacacggtccctgtacatgggaataatctgaaggaggtactc 240
           ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 536 aaatcctcaagacagctctacacggtccctgtacatgggaataatctgaaggaggtactt 477

                                                                       
Query: 241 tgcagacccagaggacggtgacataacaggtctgctttttcctgtagccccttcttacgg 300
           |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 476 tgcagacccagaggacggtggcataacaggtctactttttcctgtagccccttcttacgg 417

                                                                       
Query: 301 catcagaaccagtttgaacaggtttcaaagaaggcatggggtggggttggttttagcctc 360
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 416 catcagaaccagtttgaacaggtttcaaagaagccatggggtggggttggttttagcctc 357

                                                                       
Query: 361 gtttctggcaggatgggaaatactgacaatcagattgcattttcttgcttaaatgtgagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 gtttctggcaggatgggaaatactgacaatcagattgcattttcttgcttaaatgtgagc 297

                                                                       
Query: 421 tggttctatacaagaccagagatgtgctgtgtgtggcactttagaaattcctctgcctcc 480
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 296 tggttctatacaagaccagagatgggctgtgtgtggcactttagaaattcctctgcctcc 237

                                               
Query: 481 attaagtgcagaaacagttcagagagtaacatatag 516
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 attaagtgcagaaacagttcagagagtaacatatag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space:   458436
Effective search space used:   458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)