XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTTC
TTATCCTCCCCAAAGTATTTCATGTACATGCAAGGGAGGGGCCTGATATG
AATCACATGAGTACTGTAAAATAATATTGACTCAGAAAGTATTTTTCAAT
TTGTAAATTCAGAAAGCCATTTCTAGGTATAAAATCTGGATTAAAATATG
TACCATAATGTCTAGAATGCATAGGAACTGTTTTGCTTATGAAACACTTT
GTTTACAGTACTTCTGTTACTGGTAGACCCTTTACAAATAAGCATGGAAA
TTTAAAATATCTTCAAGCTTTTCTTTTAACTATTTATCTTTTTTCTTTAG
GTAGATTTGCAGTAAGTACATAGAGTGGTAGAGGAAATACCTAGCAGTGT
TCAAACAAGAGTAGAAACAAATGAGTTGGAAAGGAGATGGGTTAGGAAGA
TAGAATCACTGCTGGGATAAAGTCTTAATCCTGGGAGATAGGAAGGCTAA
CACTGCATCTACAGTGTAAACAAGGGGACTCAGAAACAGAAATCATCCCA
CGGAGAATGGCCAGACCCTGGCTAGCAAGAATCTGGAAAGGAGTCGGCCA
CATGTGCTAAGCAGAGAGGGAGGCAGATCTGGCTCTGATAACTGTGGGGG
AAGTTTGCCGGAATCAAGGAATCTCAAGGAAGATTCAGTCCCATCACCCA
AGGTGAAAGTGTGCAGGCAACTTCTGGGCTCTGGAGCCAA

CGATGATANTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCATCTGAAGAATACCGAATGGCAG
AGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACACTGAGATTCCACTTCACGCCAGTCAGAATGGCTAAGAT
CAAAAACTCAGGTGACAGCAAATGCTGGCGAGGATGTGNAAAAAGGGGAC
ACTCTTCATTGTTGGTGGAATTGAAGCTCGAAAACCCATTCTGACAAACA
NCCACGGGNNNNNNNNACTCTATATTCGGNNNNNNNNNNNNNGGGGGGGC
TGGGGGGGGGGGGGGGGGGGGNNTCTTCAAAAAACTATNNTAGTNNNNNT
TTNNNNAAAAAAAAGGAGAACCCCCGAAAAAGATATAGTANNTNAGGGTT
TGTGGGGGGGGGGGGAAAAATCTATTATATTTNATTATATNNNNNNNNNN
NATAAAAAAAAATAAAAAATATATATATTAANNTNNNNNTGAATTTTTTT
TTATTTTGTTTTGTGGTTGGGGTGTTCTNAAAATAAATTTTATATAGGTG
GGGGTGTCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNNTTNN
NNNNNNNNNNNNNNNCNNNNNNCNNTTNNNCNNNNNTNNNNNNNNNNNNN
NNNNNNNNNNTNTNNTTTTCGTGCGTTTTCCNTNNNNNNNTTNTCGTTTT
CGTTTTTTAGGTGTTT

Query= MSMg01no416_c08.b1 MSMg01no416_c08.b1 CHROMAT_FILE:
MSMg01no416_c08.b1 PHD_FILE: MSMg01no416_c08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:42 2005
         (589 letters)



>mm_chr5_47383039_47384027
          Length = 989

 Score = 1046 bits (541), Expect = 0.0
 Identities = 574/585 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttttcttatcctccccaaagtatttcatgtacatgcaagggaggggcctgatat 64
           |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttttcttaacttccccaaagtatttcatgtacatgcaagggaggggcctgatat 264

                                                                       
Query: 65  gaatcacatgagtactgtaaaataatattgactcagaaagtatttttcaatttgtaaatt 124
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaatcacatgaatactgtaaaataatattgactcagaaagtatttttcaatttgtaaatt 324

                                                                       
Query: 125 cagaaagccatttctaggtataaaatctggattaaaatatgtaccataatgtctagaatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cagaaagccatttctaggtataaaatctggattaaaatatgtaccataatgtctagaatg 384

                                                                       
Query: 185 cataggaactgttttgcttatgaaacactttgtttacagtacttctgttactggtagacc 244
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 385 cataggaactgttttgcttatgaaacactttgttcacagtacttctgttactggtagacc 444

                                                                       
Query: 245 ctttacaaataagcatggaaatttaaaatatcttcaagcttttcttttaactatttatct 304
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 445 ctttacaaataagcatggaaatttaaaatatcatcaagcttttcttttaactatttatct 504

                                                                       
Query: 305 tttttctttaggtagatttgcagtaagtacatagagtggtagaggaaatacctagcagtg 364
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 505 tttttctttaggtagatttgcagtaagtacagagagtggtagaggaaatacctagcagtg 564

                                                                       
Query: 365 ttcaaacaagagtagaaacaaatgagttggaaaggagatgggttaggaagatagaatcac 424
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 565 ttcaaacaagagtagaaacaaatgagttggaaaggagatgggttaggaagatagaatcgc 624

                                                                       
Query: 425 tgctgggataaagtcttaatcctgggagataggaaggctaacactgcatctacagtgtaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 625 tgctgggataaagtcttaatcctgggagataggaaggctaacactgcatttacagtgtaa 684

                                                                       
Query: 485 acaaggggactcagaaacagaaatcatcccacggagaatggccagaccctggctagcaag 544
           ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||
Sbjct: 685 acaaggggactcagaaacagaaatcatcccacccagaatggccagaccctggctagcaag 744

                                                        
Query: 545 aatctggaaaggagtcggccacatgtgctaagcagagagggaggc 589
           ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 745 aatctggaaaggagtcggccacatgtgataagcagagagggaggc 789


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space:   566841
Effective search space used:   566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)