Query= MSMg01no416_h03.b1 MSMg01no416_h03.b1 CHROMAT_FILE:
MSMg01no416_h03.b1 PHD_FILE: MSMg01no416_h03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:04 2005
(442 letters)
>mm_chr5_36253932_36254773
Length = 842
Score = 613 bits (317), Expect = e-180
Identities = 390/439 (88%), Gaps = 42/439 (9%)
Strand = Plus / Minus
Query: 5 ggaattcttctggttttcacaggccccaggcacatatgtgtacatacatgtaagcaaata 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 660 ggaattcttctggccttcacaggccccaggcacatatgtgtacatacatgtaagcagata 601
Query: 65 ctcatatacataatataaaaataagtaaagttttttgtagaaaaaaaataaagaacaaaa 124
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 600 ctcatacacataatataaaaataagtaaagctttttgtagaaaaaaaataaagaacaaaa 541
Query: 125 agagccttgactatcacatacacacacacacacacacacacacacacacacacacacaca 184
|||||||||||||||||| ||||||||||||||||||||
Sbjct: 540 agagccttgactatcaca----------------------cacacacacacacacacaca 503
Query: 185 cacacaacttctcccttcacagctgagtatacggtgtccacataataaaggcaacagcct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 cacacaacttctcccttcacagctgagtatacggtgtccacataataaaggcaacagcct 443
Query: 245 ggcttcaggatagagccaactcaacagtggggcaagactctggcttggagcaagactctg 304
|||||||||||||| |||||||||||||||||||||| | ||||
Sbjct: 442 ggcttcaggatagacccaactcaacagtggggcaaga----g--------------tctg 401
Query: 305 gcttggagcatatgtcatcatactgtactacttctaatgaaggagggaagaagccagaca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 gcttggagcatatgtcatcatactgtactacttctaatgaaggagggaagaagccagaca 341
Query: 365 caggccatcccacccacaccacagtcattcagcaggtcacatggcacctgtggaa-agac 423
||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||
Sbjct: 340 caggccatcccacccacaccatagtcattcagcaggtcacatggcacctgtg-aagagac 282
Query: 424 ttatgcttcccaaatactg 442
|||||||||||||||||||
Sbjct: 281 ttatgcttcccaaatactg 263
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space: 360689
Effective search space used: 360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no416_h03.g1 MSMg01no416_h03.g1 CHROMAT_FILE:
MSMg01no416_h03.g1 PHD_FILE: MSMg01no416_h03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:04 2005
(438 letters)
>mm_chr5_36093934_36094771
Length = 838
Score = 768 bits (397), Expect = 0.0
Identities = 427/439 (97%), Gaps = 4/439 (0%)
Strand = Plus / Plus
Query: 1 aatggtttcaggacagatggagacaggagagtccctgggagatcatgggacaggagtatg 60
|||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct: 197 aatggtctcaggacagatgaagacgggagagtccctgggagatcatgggacaggagtatg 256
Query: 61 tggcaaggttccagggcagcggtgctcaacctgtgggttgcactcctttggggggg---- 116
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 257 tggcaaggttccagggcagcagtgctcaacctgtgggttgcactcctttggggggggggg 316
Query: 117 ccaaatgaccctttcacaggggtcacctaaaaccattggaaaacatagatatctgcattg 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ccaaatgaccctttcacaggggtcacctaaaaccattggaaaacatagatatctgcattg 376
Query: 177 cgattcataaaagcaaaattcgttatgaagtaacaacaaaataactttacggctgaaggt 236
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 377 cgattcataaaagcaaaattcgttatgaagtaacaacaaaataactttatggctgaaggt 436
Query: 237 catcacaatatgaggaactgtatcaaagggtcacagcattagggaggttgagaaagactg 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 catcacaatatgaggaactgtatcaaagggtcacagcattagggaggttgagaaagactg 496
Query: 297 acctagggtgataagagacactgtttgaaaagggggaagacaccttaccactgacatctg 356
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 497 acctagggtgataagagacactgtttgaaaaggtggaagacaccttacgactgacatctg 556
Query: 357 aaggcctcctctgagctccgaatatactgtgcacgtgctgggcacccatctcacccccaa 416
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 aagtcctcctctgagctccgaatatactgtgcacgtgctgggcacccatctcacccccaa 616
Query: 417 cagcaacgtaagggaggaa 435
|||||||||||||||||||
Sbjct: 617 cagcaacgtaagggaggaa 635
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space: 355641
Effective search space used: 355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
