BAC Information

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BAC

Clone NameMSMg01-416H12
Chromosome5 (Build37)
Map Location 86,818,767 - 86,819,105
singlet/doubletsinglet
Overlap genenone
Upstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c, Tmprss11d
Downstream geneTmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e, A730098D12Rik, LOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37, LOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-416H12.T7 (MSMg01no416_h12.b1)MSMg01-416H12.TJ (MSMg01no416_h12.g1)
ACCAG512278AG512279
length708735
length of high quality
(start - end)		534 (17 - 550)564 (78 - 641)
definitionCHROMAT_FILE: MSMg01no416_h12.b1 PHD_FILE: MSMg01no416_h12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:06 2005CHROMAT_FILE: MSMg01no416_h12.g1 PHD_FILE: MSMg01no416_h12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTCCTAATGCGAGAGGATCCGCGGAATTCACGCCCATTCACTGCCCATC
TCGGGGCGTAGTAATGGGGTGATGGGTGAGCAACTAATCAGGTGCTGTCA
CGCCACATCAGGTGCTGAAACGTCACGCTGCGGGGTATATAAGCAGCGCC
ATTTTCTGGGTTCGGGGTCTTCCTTATGTTGAAGCAATAAAAGCTTTGCC
GTAGAAGGATCCAGTTGTCTGAGTGAATTCTTGCCGGTGAGATACTAGCT
CGGGCGAGAAGTGGTGCCGAGAAACCCGGGAATTTATCATCACCAGGTGC
TGATAGGAGACCCCCCCCCCCGTTTCACGGGGCGGGTTCAGAACTACGGG
ACACTTTACAGCTCTGCAAGTTACGTACAGTCTTGAAATTTCTCCAGAGT
TAGACGCCCTTTTGATTGTTTTCACGGCGATTATTCCTTCCCTTTTGGTT
TCATTTTGCTTCCACCACTGGAACTGCTGACTGGTTGTCAGTCACGGTCA
GGCCTGGACAGCAACCAGTATGGGGGCCTCCCACTCTGTGGTGACCGCCT
TACGGTCGGGCCTGAAGCAGCGTGGCTTGAAAGTCGCCTCCAAGACATTA
GAAGGCTTTTGTAAAGAGGTAGATCGCTTAACCTCGTGGTTTTGATGCTT
CCGGGTCCTTAACTATCCCCTCTTGGCAGAAACTCCAGGTATAATTTAAG
TCTGCAAA

CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAACCAAGGCTGCCTGTATAGCCT
TCATGTGGAGTTAGTCATTGGAGTCTGGCGGTGTCATCAACTAAAAACAA
GAACACTCCAAATCCCAGACAACATACAACATCGCTTGTTAATCATTGAG
GTATGTGACTTTCAGTGTTCCTTCCCTATCAATCCCTGCCTATTGTCAGC
TCCATTCTTGGGTAGACCCTGTACAGACAACCACAGCTAGTAATCTTGCG
ATTGTAGTTTGCTGTTGTTGTTGTTGTTGCTGTTGGGCTATTTTTTTTCA
TCTTGCACTGAAAATGCATCCCATTTCCCCATATTTTGAATTGTACATTC
TTTTAGTCCCTCTTCTGCAATGTCCCTGAGCCTTACAAGGTATTATATAA
ACATGTTGTTTACAGCTGAGCAGGCAACTGTTACTTATCAACACCTTAAG
TAGTCTTAAGTTTCTACATTCATTGGAAAGAGGAGCTTCTCTGATTAAAG
CGGAGAGTAGCATTTGCCCTTGAGTATAAATATATATATTTTATGCTTTC
TATGTTATATCTCTTTGTTTAAAAACAGTATTAGGTTTCCTGTGTAGACT
GGNGATAACCCCTGCCATGCTTTTTTTTTTTCTTTTTTGGGCCTTTTGCT
TTTTTGTTAATTTACCGGGATTTACAAAATAACAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no416_h12.g1 MSMg01no416_h12.g1 CHROMAT_FILE:
MSMg01no416_h12.g1 PHD_FILE: MSMg01no416_h12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:06 2005
         (564 letters)



>mm_chr5_86818767_86819730
          Length = 964

 Score =  640 bits (331), Expect = 0.0
 Identities = 337/339 (99%), Gaps = 1/339 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaccaaggctgcctgtatagccttcatgtggagttagtcattggagtctggcggtgtcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 aaccaaggctgcctgtatagccttcatgtggagttagtcattggagtctggcggtgtcat 280

                                                                       
Query: 61  caactaaaaacaagaacactccaaatcccagacaacatacaacatcgcttgttaatcatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 caactaaaaacaagaacactccaaatcccagacaacatacaacatcgcttgttaatcatt 220

                                                                       
Query: 121 gaggtatgtgactttcagtgttccttccctatcaatccctgcctattgtcagctccattc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 gaggtatgtgactttcagtgttccttccctatcaatccctgcctattgtcagctccattc 160

                                                                       
Query: 181 ttgggtagaccctgtacagacaaccacagctagtaatcttgcgattgtagtttgctgttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 ttgggtagaccctgtacagacaaccacagctagtaatcttgcgattgtagtttgctgttg 100

                                                                       
Query: 241 ttgttgttgttgctgttgggcta-ttttttttcatcttgcactgaaaatgcatcccattt 299
           ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 99  ttgttgttgttgctgttgggctatttttttttcatcttgcattgaaaatgcatcccattt 40

                                                  
Query: 300 ccccatattttgaattgtacattcttttagtccctcttc 338
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 39  ccccatattttgaattgtacattcttttagtccctcttc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space:   528516
Effective search space used:   528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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