BAC Information

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BAC

Clone NameMSMg01-416K10
Chromosome5 (Build37)
Map Location 81,942,111 - 81,942,648
singlet/doubletsinglet
Overlap geneLphn3
Upstream geneLOC100039506, LOC100039384
Downstream geneEG433912
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-416K10.T7 (MSMg01no416_k10.b1)MSMg01-416K10.TJ (MSMg01no416_k10.g1)
ACCAG512417AG512418
length719746
length of high quality
(start - end)		538 (55 - 592)245 (78 - 322)
definitionCHROMAT_FILE: MSMg01no416_k10.b1 PHD_FILE: MSMg01no416_k10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:20 2005CHROMAT_FILE: MSMg01no416_k10.g1 PHD_FILE: MSMg01no416_k10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCCGCTATACGACTCCTATATTCAGAGGATCCGCGGAATTCACATTA
CTCACCCTGGCCTTGAACTCTTGGCAATCATCTTGTCTCAGCCTCCCATG
AGCCGAGTTTACAGGCATGAGCCACCATGCCCAACAAAACCTAATAATAG
TAAAAATGAAAAGCATGAAGGATTCTTTTTATATTCATCGCTATATAATA
TTAAAAGTCAATAGTATGTTCCCACAGGGGGAAGTATTCAAAAAAATTGA
ACTTAAAGATTATTTCAGCTTAATCATGACAGTGTTTTCAAGTATTTACA
TTTATTCAAAGATTTGAATGATTGTATTTATGAGTTATTAAGTAGGTTTG
CTGAGACACACGTACTTCTGAAGCATCCATACTTGCCCCAGGATAGGTTT
TATGTATCATTCTTTGTGGGGTAGAGTTGTTCTTGTTCAGCTCCAGTAGC
ATTCTGGGGAGCTAACCTTTTTATATGATCCGAATGGAGAATAAAACACT
CTTGAGAAGATTCCACAGTTAATGTGACAGGACAGATGCAATCTTAGCAG
AAGCTGTATATAATTCATTACACACAGTAATAACTATGCGATAAAGGCAA
GTATACCTCACAGAGCAACTTGAGTTAGGAGAGAAAGCCATGCAAAGACA
GAGTCCCTTCTCATGGCTCCACATTCTTAGAGAGCAAATAAATTGCACCA
ACCTATTGTAAATGAAAAG

CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGTAATCCTAGCGAAGTATTTCC
CTCTGGTTGTTTCTAACTATGGGCTCCTCCAGTCTTTCTGTCATCTCGTC
AATGGTGGCCTCTGAGTCTCAGAAATGGTAAGACAGAGGCCCGATATGTG
GTTGACCGCACTACTGACATTTATGCTCGCCTTTTAACTAGCTGTGAGTT
TCGATGTTAAATACCATCCACTGCACAAATAGACTTTTTTTGATGAGATC
TGGGGACAGAAGTGATATGTGAGTCTATAAATAGGAAGTTAGAGGGCAGT
TTAATACTAGGTTCATTTAGCAAAATGAAAGTGGTGGGCTCATAGGCTCA
TTTGGAATCACTCTGTTGTTGTTGCTTTAACAGTAACCTTCTTGCAGATA
CATAAGAAGGCCACTAAGGATTTTCCGTAGCTCCATCCCACCAAGGCCAC
ACAGACTCTACTAAGTTAATACAAGCTTTCTTCCAGAAAAACAAATATAT
GTATGTATATGTGTATGTGCATATGTATATGTGTATGTATGTGTACACAC
ACTCACATTCATCTTTACCCCCTTCAAATTTTCACCCTGAATTTTTTTTA
TAAGTTTAATTTTTTCTCCCTTCTTTTTCTCTATGATTTTTTTTGTATTT
GTCGGGTTTTTGTTCTTTTTTTTTGCATTTTCTATTCTCTGTTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no416_k10.b1 MSMg01no416_k10.b1 CHROMAT_FILE:
MSMg01no416_k10.b1 PHD_FILE: MSMg01no416_k10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:20 2005
         (538 letters)



>mm_chr5_81941830_81942768
          Length = 939

 Score = 1025 bits (530), Expect = 0.0
 Identities = 536/538 (99%), Gaps = 1/538 (0%)
 Strand = Plus / Minus

                                                                       
Query: 2   cctggccttgaactcttggcaatcatcttgtctcagcctcccatgagccgagtttacagg 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 cctggccttgaactcttggcaatcatcttgtctcagcctcccatgagccgagtttacagg 760

                                                                       
Query: 62  catgagccaccatgcccaacaaaacctaataatagtaaaaatgaaaagcatgaaggattc 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 catgagccaccatgcccaacaaaacctaataatagtaaaaatgaaaagcatgaaggattc 700

                                                                       
Query: 122 tttttatattcatcgctatataatattaaaagtcaatagtatgttcccacagggggaagt 181
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 699 tttttatattcatcgctatataatattaaaagtcaatagtatgttcccgcagggggaagt 640

                                                                       
Query: 182 attc-aaaaaaattgaacttaaagattatttcagcttaatcatgacagtgttttcaagta 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 attcaaaaaaaattgaacttaaagattatttcagcttaatcatgacagtgttttcaagta 580

                                                                       
Query: 241 tttacatttattcaaagatttgaatgattgtatttatgagttattaagtaggtttgctga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 tttacatttattcaaagatttgaatgattgtatttatgagttattaagtaggtttgctga 520

                                                                       
Query: 301 gacacacgtacttctgaagcatccatacttgccccaggataggttttatgtatcattctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gacacacgtacttctgaagcatccatacttgccccaggataggttttatgtatcattctt 460

                                                                       
Query: 361 tgtggggtagagttgttcttgttcagctccagtagcattctggggagctaacctttttat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tgtggggtagagttgttcttgttcagctccagtagcattctggggagctaacctttttat 400

                                                                       
Query: 421 atgatccgaatggagaataaaacactcttgagaagattccacagttaatgtgacaggaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 atgatccgaatggagaataaaacactcttgagaagattccacagttaatgtgacaggaca 340

                                                                     
Query: 481 gatgcaatcttagcagaagctgtatataattcattacacacagtaataactatgcgat 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 gatgcaatcttagcagaagctgtatataattcattacacacagtaataactatgcgat 282


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 939
Length adjustment: 10
Effective length of query: 528
Effective length of database: 929
Effective search space:   490512
Effective search space used:   490512
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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