Query= MSMg01no416_k11.b1 MSMg01no416_k11.b1 CHROMAT_FILE:
MSMg01no416_k11.b1 PHD_FILE: MSMg01no416_k11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:20 2005
(408 letters)
>mm_chr5_39261795_39262602
Length = 808
Score = 663 bits (343), Expect = 0.0
Identities = 379/391 (96%), Gaps = 5/391 (1%)
Strand = Plus / Minus
Query: 7 gaattcctcagatgtaccgaccctctgaaagttttaaattgggtgctcagcatattattt 66
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gaattcctcagatgtactgaccctctgaaagttttaaattgggtgctcagcatattattt 329
Query: 67 cctttagaatgtttttcttgtcagcttcaaggaacttcggaatccttcatcgcactgata 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 cctttagaatgtttttcttgtcagcttcaaggaacttcggaatccttcatcgcactgata 269
Query: 127 tgaaggcgtgagtcagtaattaccattcactatgcttaccggacaatctaaagtctactc 186
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 268 tgaaggcgtgagtcagtaattaccattcactatgcttacccgacaatctaaagtctactc 209
Query: 187 tagggctggagaggtggctccgtgtgcaagaggacttgccttgaaatcgtgaggacctga 246
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 208 tagggctggagaggtggctccgtgcgcaagaggacttgccttgaaatcgtgaggatctga 149
Query: 247 gtttgaatgacagcgcctgcataaaaaggaatctcagcggagcatgcgcaggcacgcctg 306
||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||
Sbjct: 148 gtttgaatgacagcgcctgcataaaaaggaaac-cagtggagcatgcgcaggcacgcctg 90
Query: 307 acccccagcactgtggagttgggggtgtggg-gggg-ttccaggccaataccacagctca 364
||||||||||||||||||||||||| | ||| |||| || ||||||||||||||||||||
Sbjct: 89 acccccagcactgtggagttggggg-g-gggaggggtttgcaggccaataccacagctca 32
Query: 365 gggtccgttggtgaccctgcctcaagggaat 395
|||||||||||||||||||||||||||||||
Sbjct: 31 gggtccgttggtgaccctgcctcaagggaat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 808
Length adjustment: 9
Effective length of query: 399
Effective length of database: 799
Effective search space: 318801
Effective search space used: 318801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no416_k11.g1 MSMg01no416_k11.g1 CHROMAT_FILE:
MSMg01no416_k11.g1 PHD_FILE: MSMg01no416_k11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:20 2005
(243 letters)
>mm_chr5_39089641_39090284
Length = 644
Score = 449 bits (232), Expect = e-131
Identities = 241/244 (98%), Gaps = 1/244 (0%)
Strand = Plus / Plus
Query: 1 catatgattttatctttgttggaacttgctttgtatgctcacgtatgacctagcttagag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catatgattttatctttgttggaacttgctttgtatgctcacgtatgacctagcttagag 260
Query: 61 gtcatacatgtcacatgcttcgaagctgttgaatggcacgttcttaagtgcctggtggga 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 gtcatacatgtcacatgcttcgaagctgttggatggcacgttcttaagtgcctggtggga 320
Query: 121 gctctcaggtttggagttcaagcagggg-tgggggacactgaggcaggccgtcattttgg 179
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 321 gctctcaggtttggagttcaagcagggggtgggggacactgaggcaggccatcattttgg 380
Query: 180 gtaagagattattagaagagttattaatgcaatagacacacagatggtaacagagctcag 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtaagagattattagaagagttattaatgcaatagacacacagatggtaacagagctcag 440
Query: 240 ggcc 243
||||
Sbjct: 441 ggcc 444
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 644
Length adjustment: 9
Effective length of query: 234
Effective length of database: 635
Effective search space: 148590
Effective search space used: 148590
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
