Query= MSMg01no416_k17.b1 MSMg01no416_k17.b1 CHROMAT_FILE:
MSMg01no416_k17.b1 PHD_FILE: MSMg01no416_k17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:21 2005
(655 letters)
>mm_chr5_84534896_84535953
Length = 1058
Score = 1218 bits (630), Expect = 0.0
Identities = 647/654 (98%), Gaps = 3/654 (0%)
Strand = Plus / Plus
Query: 5 gaattcttattctattacaaattctagcaaaactacaaacttctgaaggattaaggttca 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttattctaatacaaattctagcaaaactacaaacttctgaaggattaaggttca 264
Query: 65 gatggaataaaataaattaaaagtgagaccaaacgtccacagtactattaacaaaagtaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gatggaataaaataaattaaaagtgagaccaaacgtccacagtactattaacaaaagtaa 324
Query: 125 atgtcacatttggaaatatcttgtgtatgtgatctaaagacaccttagggcttactagtt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgtcacatttggaaatatcttgtgtatgtgatctaaagacaccttagggcttactagtt 384
Query: 185 tatactaaacaatccaaatagtaacagtagatacaaatttaaaaaaaaaa---cctgact 241
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 385 tatactaaacaatccaaatagtaacagtagatacaaattaaaaaaaaaaaaaacctgact 444
Query: 242 gtaattcatttttgtttttcttccttcacagtctactaggatctactactgatgataaga 301
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 445 gtaattcatttttgtttttcttccttcacagtctactaggatctactactgattataaga 504
Query: 302 aaaaaagaaaggggaataagacaaagagaaattcaattgtgtaaacacagggtcaagatg 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaaaaagaaaggggaataagacaaagagaaattcaattgtgtaaacacagggtcaagatg 564
Query: 362 aattgaacagaacaaataatttccagtattacagaatatgtatatatgcaaagattcttt 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aattgaacagaacaaataatttccagtattacagaatatgtatatatgcaaagattcttt 624
Query: 422 acttgcttcataaataaggcaggcatttgaatatcaactacacagaagataggatcgaga 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acttgcttcataaataaggcaggcatttgaatatcaactacacagaagataggatcgaga 684
Query: 482 gatgataagttacagacaattttgaaagtcaattacaaaagattaaggatattctattgg 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gatgataagttacagacaattttgaaagtcaattacaaaagattaaggatattctattgg 744
Query: 542 agaagaatacattgatgtattatattctgtagtacaaacaaaggtgaaatctcagaattt 601
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 745 agaagaatacattgatgtattatattctgttgtacaaacaaaggtgaaatctcagaattt 804
Query: 602 agacatcctcatacctgctccgatcactctctcaatggtgatgcatgaagcttc 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 agacatcctcatacctgctccgatcactctctcaatggtgatgcatgaagcttc 858
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1058
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1048
Effective search space: 675960
Effective search space used: 675960
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no416_k17.g1 MSMg01no416_k17.g1 CHROMAT_FILE:
MSMg01no416_k17.g1 PHD_FILE: MSMg01no416_k17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:21 2005
(479 letters)
>mm_chr5_84683540_84684418
Length = 879
Score = 926 bits (479), Expect = 0.0
Identities = 479/479 (100%)
Strand = Plus / Minus
Query: 1 aagaacaccactaatttacaacgttttactgatagtttaagctatgataataagctaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 aagaacaccactaatttacaacgttttactgatagtttaagctatgataataagctaaga 620
Query: 61 gttaaaaataaaattcaaataaattcaaatagaagacataattgccaacttctgaatctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gttaaaaataaaattcaaataaattcaaatagaagacataattgccaacttctgaatctc 560
Query: 121 acaaaacttaaaataatagctaacaaatagtaagtgaatttaaaaagcatcaaagcatca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 acaaaacttaaaataatagctaacaaatagtaagtgaatttaaaaagcatcaaagcatca 500
Query: 181 gcattgtccaggggagtgacattaacagtaggtattgtaagcatataagctgaattatat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gcattgtccaggggagtgacattaacagtaggtattgtaagcatataagctgaattatat 440
Query: 241 aactatgaaagcagaaaagtcttattatctgttttctgtcatctatagaatcaggaaaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aactatgaaagcagaaaagtcttattatctgttttctgtcatctatagaatcaggaaaac 380
Query: 301 atgatataatcaagttcaactctgacaacctgaggacaatgacccatgagaataaaaagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 atgatataatcaagttcaactctgacaacctgaggacaatgacccatgagaataaaaagt 320
Query: 361 tgacattcctgttcagaaggcaagctataatttgaatttctgccattttttgttctattc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tgacattcctgttcagaaggcaagctataatttgaatttctgccattttttgttctattc 260
Query: 421 aagccatcacattctaaaggggcatccaacactgttgagtttgatcaatttcattcagc 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 aagccatcacattctaaaggggcatccaacactgttgagtttgatcaatttcattcagc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space: 407561
Effective search space used: 407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
