Query= MSMg01no416_m01.b1 MSMg01no416_m01.b1 CHROMAT_FILE:
MSMg01no416_m01.b1 PHD_FILE: MSMg01no416_m01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:27 2005
(575 letters)
>mm_chr5_139179924_139180894
Length = 971
Score = 932 bits (482), Expect = 0.0
Identities = 542/566 (95%), Gaps = 8/566 (1%)
Strand = Plus / Minus
Query: 7 ggaattcattagatctgcccctgaccttggcctctttggccccagagttgttttttggtt 66
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 847 ggaattcattagatcagcccctgaccttggcccctttggccccagagttgttttttggtt 788
Query: 67 tttgtttgtttgtttgtttgttttaaggaaccccttctgggccagttcaagagaaaagtc 126
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 ----tttgttcgtttgtttgttttaaggaaccccttctgggccagttcaagagaaaagtc 732
Query: 127 ttcattcatcactgacatctggtcattgcttcgggcccagcctgggcacagtgggccacc 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 ----ttcatcactgacatctggtcattgcttcgggcccagcctgggcacagtgggccacc 676
Query: 187 atgtcactcccagacaataggaatagataacctgatcaacaggcacctgaccaccgtggg 246
|||||||||||||||||||||||||| | ||||||||||||| ||||||||||||| ||
Sbjct: 675 gtgtcactcccagacaataggaatagacaccctgatcaacagggacctgaccaccgtcgg 616
Query: 247 atagccttatccctccaagaaacctaagacaccttgttcctgcagagtctccaagcaagc 306
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 615 atagccttatccctccaagaaacctaagacaccttggtcctgcagagtctccaagcaagc 556
Query: 307 agggcacagcgctgtgcccagccttcactcactcatacattcatctcgaggcaccccagg 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 agggcacagcgctgtgcccagccttcactcactcatacattcatctcgaggcaccccagg 496
Query: 367 ctttaaagggaaccagacttgaggatgtccagccagatcgttgacatttatagttagttc 426
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 495 ctttaaagggaaccagacttgaggatgaccagacagatcgttgacatttatagttagttc 436
Query: 427 ttatgacttccttgttaaggagtaaaattatgtttggagcgaaaaatcacaagcccttca 486
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 435 tcatgacttccttgttaaggagcaaaattatgtttggagcgaaaaatcacaagcccttca 376
Query: 487 agtaggattaggctgtgtacccactcacaccaggggctaggaacacctgggtaaaggcca 546
||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 375 agtaggaatgggctgtgtacccactcacacccggggctaggaacacctgggtaaaggcca 316
Query: 547 ttgagttcgctcggagttggggaggg 572
||||||||||||||||||||||||||
Sbjct: 315 ttgagttcgctcggagttggggaggg 290
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 971
Length adjustment: 10
Effective length of query: 565
Effective length of database: 961
Effective search space: 542965
Effective search space used: 542965
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no416_m01.g1 MSMg01no416_m01.g1 CHROMAT_FILE:
MSMg01no416_m01.g1 PHD_FILE: MSMg01no416_m01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:27 2005
(595 letters)
>mm_chr5_138958372_138959366
Length = 995
Score = 565 bits (292), Expect = e-165
Identities = 301/304 (99%)
Strand = Plus / Plus
Query: 2 aatatttgcccacatctgtgaattttgacagattatgcagcctgctttttttaaggagtc 61
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 202 aatatttgcccacatctgtgaattttgacagattatgcagcctgcttattttaaggagtc 261
Query: 62 tgtacatttcatgtatggaaggacactttttatctttgaaaatactcttcaagacagaca 121
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tgtatgtttcatgtatggaaggacactttttatctttgaaaatactcttcaagacagaca 321
Query: 122 ctttcatactaatttcatatttgacctgagtatttaagaaagtactctgttttcctcagc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ctttcatactaatttcatatttgacctgagtatttaagaaagtactctgttttcctcagc 381
Query: 182 agttctgaaggaagtcaggctcttgcattctatctgtgctattgagcttcactatctatc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 agttctgaaggaagtcaggctcttgcattctatctgtgctattgagcttcactatctatc 441
Query: 242 accaagagtatcaggagttagaaactcttgtctaagtaacattttataagattaaacata 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 accaagagtatcaggagttagaaactcttgtctaagtaacattttataagattaaacata 501
Query: 302 tttt 305
||||
Sbjct: 502 tttt 505
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space: 576225
Effective search space used: 576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
