Query= MSMg01no416_m20.b1 MSMg01no416_m20.b1 CHROMAT_FILE:
MSMg01no416_m20.b1 PHD_FILE: MSMg01no416_m20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:30 2005
(513 letters)
>mm_chr5_84730806_84731718
Length = 913
Score = 949 bits (491), Expect = 0.0
Identities = 506/511 (99%), Gaps = 2/511 (0%)
Strand = Plus / Plus
Query: 4 ggaattcaaggcatattcacattgtttttgcctaaggaacagatatccaagtctccacaa 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaaggcatattcacattgtttttgcctaaggaacagatatccaagtctccacaa 263
Query: 64 tccttggactagataagctattctcacattatatctctaaaagtccaaactctacccttt 123
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 264 tccttggactagataagctattctcacattatatctcaaaaagtccaaactctacccttt 323
Query: 124 aagcacctctataataatattggccatcaacgggggggagaggtccttggtattgcgaag 183
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 324 aagcacctctataataatattggccatcaacgggggg-agaggtccttggtattgcgaag 382
Query: 184 atcatatgcctagtacaggggaatgccagggccaggaagcaggagtgggtgggttgggga 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 atcatatgcctagtacaggggaatgccagggccaggaagcaggagtgggtgggttgggga 442
Query: 244 gcagggcagatggagggtatagggggctttggagatagcataggaaatgtaaatgaaaat 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gcagggcagatggagggtatagggggctttggagatagcataggaaatgtaaatgaaaat 502
Query: 304 atctaataaaaaa-caaaagaagaaaaaaggcactttccccattctacttcattcctaat 362
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 503 atctaataaaaaaacaaaagaagaaaaaaggcactttcccaattctacttcattcctaat 562
Query: 363 cctagagataatgatgtgtcagaagactctgcaacaagagagtacccatcaaacttccaa 422
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 563 cctagagataatgatgtgtcagaagactctgcaacaggagagtacccatcaaacttccaa 622
Query: 423 cctttctctctgtatagtgatatggaatgtcctactaatccctttacatatataaattgt 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 cctttctctctgtatagtgatatggaatgtcctactaatccctttacatatataaattgt 682
Query: 483 gtcacttcttaccctatgaagggattgaatg 513
|||||||||||||||||||||||||||||||
Sbjct: 683 gtcacttcttaccctatgaagggattgaatg 713
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space: 454209
Effective search space used: 454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no416_m20.g1 MSMg01no416_m20.g1 CHROMAT_FILE:
MSMg01no416_m20.g1 PHD_FILE: MSMg01no416_m20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:30 2005
(485 letters)
>mm_chr5_84773449_84774333
Length = 885
Score = 694 bits (359), Expect = 0.0
Identities = 362/363 (99%)
Strand = Plus / Minus
Query: 1 gtttcttgatcaaatcataaacttccttttaggcattaattttctttgtgatacttcaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gtttcttgatcaaatcataaacttccttttaggcattaattttctttgtgatacttcaaa 304
Query: 61 caaagttcagagcaacaaggttttgtacatggtagataagcaaactctactactgaatga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 caaagttcagagcaacaaggttttgtacatggtagataagcaaactctactactgaatga 244
Query: 121 tttctccagcccagcccacaaatatatataaaagtttcttcctagactgagggaaaggag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 tttctccagcccagcccacaaatatatataaaagtttcttcctagactgagggaaaggag 184
Query: 181 gtccagtgacctgtccaacttgggatccatctcaagggcaggttccaaggcctgacacta 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 gtccagtggcctgtccaacttgggatccatctcaagggcaggttccaaggcctgacacta 124
Query: 241 ttactgatgttatggtgtgcttacagctaggagcctagcatggctctcctccaagagacc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 ttactgatgttatggtgtgcttacagctaggagcctagcatggctctcctccaagagacc 64
Query: 301 caataagcagctgactaagacagaagcagataattcacctaatggactgaagtcagggac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 caataagcagctgactaagacagaagcagataattcacctaatggactgaagtcagggac 4
Query: 361 ccc 363
|||
Sbjct: 3 ccc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space: 415625
Effective search space used: 415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
