Query= MSMg01no416_m23.b1 MSMg01no416_m23.b1 CHROMAT_FILE:
MSMg01no416_m23.b1 PHD_FILE: MSMg01no416_m23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:31 2005
(496 letters)
>mm_chr5_108379343_108380238
Length = 896
Score = 928 bits (480), Expect = 0.0
Identities = 489/492 (99%)
Strand = Plus / Plus
Query: 5 gaattcagttttagttgcttacagtatgcttgaacatttagatggttacaatactgtatg 64
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagttttagatggttacagtatgcttgaacatttagatggttacaatactgtatg 264
Query: 65 cttgaacattgaaagggactatttgtggtatgagctaagtgttgtcccagaaaagaacat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cttgaacattgaaagggactatttgtggtatgagctaagtgttgtcccagaaaagaacat 324
Query: 125 gttcaaagggggtaaaccttagcatacagccaggaataaagaggttgggcggtgttggag 184
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gttcaaagcgggtaaaccttagcatacagccaggaataaagaggttgggcggtgttggag 384
Query: 185 gggtaaggaaacattgctgcttaaaccgaccagttgaagagcccagctgagcacccaggc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gggtaaggaaacattgctgcttaaaccgaccagttgaagagcccagctgagcacccaggc 444
Query: 245 cttacaacacattgtgtgtctgagcaagggagtgacaacttttaccacagtaaaagcctg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cttacaacacattgtgtgtctgagcaagggagtgacaacttttaccacagtaaaagcctg 504
Query: 305 tgagaggaaggaaggggtgtagggcgtggtgaccgagagaaacattcaggaacacaggct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgagaggaaggaaggggtgtagggcgtggtgaccgagagaaacattcaggaacacaggct 564
Query: 365 agggaggtaatcagacacaggctagcctgtggaactgggaggcaggcctgaagcactcct 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agggaggtaatcagacacaggctagcctgtggaactgggaggcaggcctgaagcactcct 624
Query: 425 ggcagggtctggaggaagccagatctccactactagagagtaatgattgcttgctgttgc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggcagggtctggaggaagccagatctccactactagagagtaatgattgcttgctgttgc 684
Query: 485 tactgatacttt 496
||||||||||||
Sbjct: 685 tactgatacttt 696
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space: 430596
Effective search space used: 430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no416_m23.g1 MSMg01no416_m23.g1 CHROMAT_FILE:
MSMg01no416_m23.g1 PHD_FILE: MSMg01no416_m23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:31 2005
(442 letters)
>mm_chr5_108559354_108560195
Length = 842
Score = 787 bits (407), Expect = 0.0
Identities = 434/443 (97%), Gaps = 1/443 (0%)
Strand = Plus / Minus
Query: 1 agtatttagcccaggctagcatcagatctcacaggagtccttctctaagtcgtgt-gtcc 59
|||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||
Sbjct: 745 agtatttagcccaggctagcctccgatctcacaggagtccttctctaagtcgtgtcctcc 686
Query: 60 ccccccccccaggactggtattacagcatgaaccatcacatcctacaggcaatttgaata 119
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ccccccacccaggactggtattacagcatgaaccatcacatcctacaggcaatttgaata 626
Query: 120 aagcatgattcttgattttcagagaataggattgttggagaaaataaaaataaatctgaa 179
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aagcatgatttttggttttcagagaataggattgttggagaaaataaaaataaatctgaa 566
Query: 180 aatgagttaagaatgcaaggaatgaggccagttttagaaaagggaagaattgactagaca 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aatgagttaagaatgcaaggaatgaggccagttttagaaaagggaagaattgactagaca 506
Query: 240 ttgtgattgtaggatgtatagtttaagtgttccgaggcatactataagtactggggtttt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttgtgattgtaggatgtatagtttaagtgttccgaggcatactataagtactggggtttt 446
Query: 300 attagctttgaagactgtcaggtcttagggtaggagtagcaaaggaagaaaatagagcac 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 445 attagctttgaagactgtcaggtcttagggtaggagtagcaaaggaagaaaatagaccac 386
Query: 360 acatcgaggcaacgcagaagggaccataaatgtgttttgtgatgaataccttttccctta 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acatcgaggcaacgcagaagggaccataaatgtgttttgtgatgaataccttttccctta 326
Query: 420 ttttttgcaaggacatgtaagat 442
|||||||||||| ||||||||||
Sbjct: 325 ttttttgcaaggccatgtaagat 303
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space: 360689
Effective search space used: 360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
