Query= MSMg01no417_b10.b1 MSMg01no417_b10.b1 CHROMAT_FILE:
MSMg01no417_b10.b1 PHD_FILE: MSMg01no417_b10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:52 2005
(579 letters)
>mm_chr5_54661409_54662387
Length = 979
Score = 1069 bits (553), Expect = 0.0
Identities = 568/573 (99%)
Strand = Plus / Plus
Query: 5 gaattctcatcttttctgtccacacttgctgataaggcaaagtcagaaacaagtaacttg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcatcttttctgtccacacttgctgataaggcaaagtcagaaacaagtaacttg 264
Query: 65 ccttacatccaaatattagcttctctagtgacatttgcatttgaagtctggcttcaggaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccttacatccaaatattagcttctctagtgacatttgcatttgaagtctggcttcaggaa 324
Query: 125 agaaaaagctttgtgtagacatgaagaaatttcagagaacaggtgggaatgcgtttttct 184
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 325 agaaaaagctttgtgtagacatgaagaaatttcagagaacaggtgggaatgtgtttttct 384
Query: 185 tccacacatgcacacagtatatccctcctagcggcagagtcttgtctgtgttttcagcta 244
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tccacgcatgcacacagtatatccctcctagcggcagagtcttgtctgtgttttcagcta 444
Query: 245 cgctttatagagcagaggctctgagctcaagttcagtatgtttgtagggcaagaaagata 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cgctttatagagcagaggctctgagctcaagttcagtatgtttgtagggcaagaaagata 504
Query: 305 taataactaaactaagaatttgcaaaaaaccttagcgtttgtttcttatgcattgtgaga 364
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 505 taataactaaactaagaatttgcaaaaaaccttagcgtttatttcttatgcattgtgaga 564
Query: 365 gaatgaagaactgctatttagctatggaggagaggactagtcttatttatggagttgaga 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gaatgaagaactgctatttagctatggaggagaggactagtcttatttatggagttgaga 624
Query: 425 tttgtgagcaagacagagattatggaaaatgatgcagaggtctactcagcaatgggggtg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tttgtgagcaagacagagattatggaaaatgatgcagaggtctactcagcaatgggggtg 684
Query: 485 agaagaaaggaaactgacactgtagctagagactgtattccataaacctccttgtttcca 544
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 685 agaagaaaggagactgacactgtagctatagactgtattccataaacctccttgtttcca 744
Query: 545 tccttgaaaagtcgctttccactttttaattaa 577
|||||||||||||||||||||||||||||||||
Sbjct: 745 tccttgaaaagtcgctttccactttttaattaa 777
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space: 551361
Effective search space used: 551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no417_b10.g1 MSMg01no417_b10.g1 CHROMAT_FILE:
MSMg01no417_b10.g1 PHD_FILE: MSMg01no417_b10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:52 2005
(495 letters)
>mm_chr5_54800528_54801422
Length = 895
Score = 696 bits (360), Expect = 0.0
Identities = 383/400 (95%), Gaps = 15/400 (3%)
Strand = Plus / Minus
Query: 96 tccattaggtcatggtagggaatctggaaattgcctttgtggcatttttgtgtgtgtttc 155
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 895 tccattaggtcatggtagggaatctggaaattgcctttgtggcatttttgtgcgtgtttc 836
Query: 156 cttgtgtaaattgtgcttcttttcgtagtgacagagataatatattttcactgtagaaaa 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 cttgtgtaaattgtgcttcttttcgtagtgacagagataatatattttcactgtagaaaa 776
Query: 216 tcccaaaacataatgaagcacacaggagaaaagaaaagtcatccacaagttgacaaaccg 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 tcccaaaacataatgaagcacacaggagaaaagaaaagtcatccacaagttgacaaaccg 716
Query: 276 cagatgcccatgtccttttggcatatgcccttccaaggacttctaatgttttatttgtta 335
||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 715 cagatgcccatgt---------------ccttccaaggacttctaatgttttatttgtta 671
Query: 336 tgttccatactttggattatatttttcttaatgttttataattttctttttgtttcaagt 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 tgttccatactttggattatatttttcttaatgttttataattttctttttgtttcaagt 611
Query: 396 aaaagtctaatcttttacaagttattaaatatcttcatcatgttctttaatagatattgt 455
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 aaaagtctaatcttttgcaagttattaaatatcttcatcatgttctttaatagatattgt 551
Query: 456 ctcatgtgcatatatgtaataaaatcaattatcctaccct 495
||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 ctcatgtgcatatatgtaataaaatcaattatcctaccct 511
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space: 429225
Effective search space used: 429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
