BAC Information

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BAC

Clone NameMSMg01-417H13
Chromosome5 (Build37)
Map Location 121,715,955 - 121,716,409
singlet/doubletsinglet
Overlap geneAU042671
Upstream geneLOC100039609, Lhx5, Sdsl, Sds, 1300012G16Rik, Slc24a6, Tpcn1, Iqcd, 1110008J03Rik, Ddx54, LOC546886, Rasal1, Dtx1, Oas2, Oas3, Oas1e, Oas1c, Oas1b, Oas1f, Oas1h, Oas1g, Oas1a, Oas1d, Oas1i, Rph3a, LOC665299, Ptpn11, Rpl6, LOC100039686, EG545802
Downstream geneTrafd1, C330023M02Rik, Erp29, Tmem116, Adam1b, Adam1a, Mapkapk5, Aldh2, 9330129D05Rik, Acad10, Brap, Atxn2, Sh2b3, A230106M15Rik, Cutl2, LOC100042693, Myl2, Ccdc63, Ppp1cc, Hvcn1, Tect1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417H13.T7 (MSMg01no417_h13.b1)MSMg01-417H13.TJ (MSMg01no417_h13.g1)
ACCAG513043AG513044
length761763
length of high quality
(start - end)
574 (69 - 642)511 (78 - 588)
definitionCHROMAT_FILE: MSMg01no417_h13.b1 PHD_FILE: MSMg01no417_h13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:22 2005CHROMAT_FILE: MSMg01no417_h13.g1 PHD_FILE: MSMg01no417_h13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTACTTTCCCAAGTTCAAAAATGTCCATGAAGACAGAGTGTCCC
TTTGGGGTTTTCTCATTTAAACTGGCAGGGGACCAGATCCAGTAGAAGTA
AGTGCCATCTGAGGAAAGGTGCACAGTGCTCATGGTGCTGCCCACAGGAA
GGGGGCTGGCGGGCATGGGCACTGTCTGGCACACCTGATTAGGAAAAAGG
CCCTTCATTAGAGGGATGCAGAGATTCTTTTTGTTTGTTTGTTTGTTCAG
TTTGGTTTTTTTCAAGAGAGATGTGGCTATCTGGGAACTCACTCTGTAGA
CCCAGTTGGCTTTTGAACTCACAGAAATCCACCTGCCTCTGCTTCCCCAG
TGCATGAGTATGCCTAGCACAGGACAAAAAAATTCTAATTTGATGTCATC
TAACTGACACTTTAAAGTCGAAAAGGAAAATTCATTAGGTTCCTTATCAG
AATAAAACTGTTATTTATATCTAAGAATAACACATAAAATTATATGGGAG
GAACATAAAAGTTCATAAAATAGACTGTAAAATAAACATCAACAGCCAAA
CAATAAAGGAAAATGGACATTAACTCAAGTTATACTGTGATAGAAAAATA
TTTACTACGTTCTTTAAATCTGCTCTACATGGATATTCCAACATTGAGAA
TGAGATTTTAAAAACAGGCATGGAGGACATGCTTGTAATCCCCGCACCAA
AGATGAAAGTA
NCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTCTATTGCCAAAAGTTCCTG
TTGCTGTACCAGCAAACCAAGATTTTATTTTCATTATTTGTATGTGTACG
TGGGCATGTGCACGTGAGTGCAGTGCCGGTGGAGGCCAGAAGAGGGCGAC
AGATCCCTGGAGTTTGTGTTACAGGTACTTGCCAAGCTCTTAATGTGGGT
GCTGAAAACTGGACCTTGGTCCTCTGCAACAACAGTATGTTCTCTTGGCC
ACTGAGCCATCTCTTCAGTCCCTGTTAATCACTGCTTACTTTGTCTTTAG
TGTATGTGCCTCGTGAGATCACATAAAGCACATACAGGCTGTGACCCAAG
CATGGAAGTTAGAGGACAACATTGTACAGTCTGTCCCTTTCCACTCTTAA
TTGGATTCTGATGATAGAACTCAGGTCATTGGGCTCTCTTGCCTCATGTT
AACTATGGAGATGTTTCTGGGCTTCATCCTCTGAACCTTCAGGTGATGAA
TAACTCATTCATTCATTCATTCATTCATTCATTCATTCATGTCTGAAGCC
TGTTTTCTCCTAACCCAGGATAGTGAAGAGCCCATAAAATGTCACATCAG
GGAGGAGTAGGATACAGCTGTGAGTGACCCCGAGGTTTACTTGCATTATG
GAAAGTCACCCTGGCTTAGGGGGTCCACCCCCTTTATGGTCACTCCTTAT
TTATCAGAATCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_h13.b1 MSMg01no417_h13.b1 CHROMAT_FILE:
MSMg01no417_h13.b1 PHD_FILE: MSMg01no417_h13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:22 2005
         (574 letters)



>mm_chr5_121715955_121716928
          Length = 974

 Score =  853 bits (441), Expect = 0.0
 Identities = 451/455 (99%), Gaps = 3/455 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gttcaaaaatgtccatgaagacagagtgtccctttggggttttctcatttaaactggcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 gttcaaaaatgtccatgaagacagagtgtccctttggggttttctcatttaaactggcag 396

                                                                       
Query: 61  gggaccagatccagtagaagtaagtgccatctgaggaaaggtgcacagtgctcatggtgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 gggaccagatccagtagaagtaagtgccatctgaggaaaggtgcacagtgctcatggtgc 336

                                                                       
Query: 121 tgcccacaggaagggggctggcgggcatgggcactgtctggcacacctgattaggaaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgcccacaggaagggggctggcgggcatgggcactgtctggcacacctgattaggaaaaa 276

                                                                       
Query: 181 ggcccttcattagagggatgcagagattctttttgtttgtttgtttgttcagtttggttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ggcccttcattagagggatgcagagattctttttgtttgtttgtttgttcagtttggttt 216

                                                                       
Query: 241 ttttcaagagagatgtggctatctgggaactcactctgtagacccagttggcttttgaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 ttttcaagagagatgtggctatctgggaactcactctgtagacccagttggcttttgaac 156

                                                                       
Query: 301 tcacagaaatccacctgcctctgcttccccagtgcatgagtatgcctagcacaggac-aa 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 155 tcacagaaatccacctgcctctgcttccccagtgcatgagtatgcctagcacaggacaaa 96

                                                                       
Query: 360 aaaaattctaatttga--tgtcatctaactgacactttaaagtcgaaaaggaaaattcat 417
           ||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 95  aaaaattctaatttgatgtgtcatctcactgacactttaaagtcgaaaaggaaaattcat 36

                                              
Query: 418 taggttccttatcagaataaaactgttatttatat 452
           |||||||||||||||||||||||||||||||||||
Sbjct: 35  taggttccttatcagaataaaactgttatttatat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space:   543696
Effective search space used:   543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)